Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25e12
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   6.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   6.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   6.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.6  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -3

Query: 645 YRSATQPIRNPPIMDPTKKR-ACAVAW 568
           Y + T+P+  P IM P + R   A  W
Sbjct: 164 YLAVTRPVSYPQIMSPRRARLLVATVW 190



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 566 YQATAQALFFVGSIIGGFLIGWV 634
           ++   +A   +G I+GGF++ W+
Sbjct: 449 FRMETKAAKTLGIIVGGFILCWL 471


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 212 ILLFFATSPFFLFGVFVYYSQMFITEPSPNHWCWV 316
           IL F   +PF    +   Y+Q     P  N W ++
Sbjct: 277 ILFFICWAPFHTQRLLYVYAQESDYYPDLNEWLYI 311


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 581 QALFFVGSIIGGFLIGWV 634
           +A   VG I+G FLI WV
Sbjct: 269 KAAITVGVIMGVFLICWV 286


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 534 VKWIGYVTEAVTKPRHKLFSL 596
           + W+GYV  A+    + +F+L
Sbjct: 366 ITWLGYVNSALNPLIYTIFNL 386


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 534 VKWIGYVTEAVTKPRHKLFSL 596
           + W+GYV  A+    + +F+L
Sbjct: 366 ITWLGYVNSALNPLIYTIFNL 386


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 566 YQATAQALFFVGSIIGGFLIGWV 634
           ++   +A   +G I+GGF++ W+
Sbjct: 1   FRMETKAAKTLGIIVGGFILCWL 23


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 534 VKWIGYVTEAVTKPRHKLFSL 596
           + W+GYV  A+    + +F+L
Sbjct: 366 ITWLGYVNSALNPLIYTIFNL 386


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +3

Query: 189 LGNSVFTKFYCFSQPLRFSCSVFSSTIVKCSSLNPLRT 302
           LGN +    +C ++ LR   ++F   +  C     ++T
Sbjct: 64  LGNGLVIWIFCAAKSLRTPSNMFVVNLAICDFFMMIKT 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,163
Number of Sequences: 438
Number of extensions: 4740
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)