Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25e08
         (115 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   7.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    18   9.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    18   9.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    18   9.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    18   9.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 65  PTIHKPSKMKPHR 103
           P  H PS+  PHR
Sbjct: 318 PHQHHPSQYHPHR 330


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 4/10 (40%), Positives = 10/10 (100%)
 Frame = -2

Query: 30  MSWYRDGKRV 1
           ++WY+DG+++
Sbjct: 365 ITWYKDGRQL 374


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 4/10 (40%), Positives = 10/10 (100%)
 Frame = -2

Query: 30  MSWYRDGKRV 1
           ++WY+DG+++
Sbjct: 365 ITWYKDGRQL 374


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -2

Query: 36  RAMSWYRDGK 7
           + +SW +DGK
Sbjct: 337 KTVSWLKDGK 346


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 78  LCIVGLXVHDARRTRAMSWYRDGK 7
           LCI+ L +      RA   + DGK
Sbjct: 36  LCILTLALTLVTLVRAEDIFEDGK 59


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 78  LCIVGLXVHDARRTRAMSWYRDGK 7
           LCI+ L +      RA   + DGK
Sbjct: 36  LCILTLALTLVTLVRAEDIFEDGK 59


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 78  LCIVGLXVHDARRTRAMSWYRDGK 7
           LCI+ L +      RA   + DGK
Sbjct: 36  LCILTLALTLVTLVRAEDIFEDGK 59


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 78  LCIVGLXVHDARRTRAMSWYRDGK 7
           LCI+ L +      RA   + DGK
Sbjct: 36  LCILTLALTLVTLVRAEDIFEDGK 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,336
Number of Sequences: 438
Number of extensions: 275
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 18
effective length of database: 138,459
effective search space used:  2630721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)