Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25e07
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 89 8e-19
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 29 0.86
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 29 0.86
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.0
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 2.0
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 4.6
SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces... 26 4.6
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 4.6
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 26 4.6
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 88.6 bits (210), Expect = 8e-19
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Frame = +2
Query: 188 VSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGAKFS 367
VS+ +YGA +Q+++ + ++V GF++ Y + P+ G T+GR ANRI +F
Sbjct: 380 VSIANYGALVQAVRYKGR-----NLVNGFNDFSRYKLKENPFFGATIGRFANRIANGQFE 434
Query: 368 IDGTTYQLA-NNIGKDHLHGGINGFNKANWNSTV-----DGTKVIFSYLSKDGEEGYPGD 529
+DG Y L N K LHGG NGF+K + + D + F + KDG G+P D
Sbjct: 435 VDGHLYTLCKNENNKTTLHGGNNGFDKQFFLGPIARQYEDYNTLEFILVDKDGNNGFPSD 494
Query: 530 LITNITYEVTEDNALHVDFMS-----XXXXXXXXXXXXHSYFNLA 649
L T + Y + ++N+L +++ S HSY+NLA
Sbjct: 495 LETLVKYTI-KNNSLEIEYKSVIPEYSKLNVTAVNLTNHSYWNLA 538
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 28.7 bits (61), Expect = 0.86
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = -2
Query: 495 R*LNITLVPSTVEFQFALLNPLIPPCK*SFPMLLAS**VVPSMLNFAPPILLAQRPTVVP 316
R LNI+++PS V L+N L P + ++AS VP +LN P + +Q ++P
Sbjct: 362 RILNISVIPSDVHSPPKLINYLTSPDTVIWSAVIAS-CAVPGILNPIPLMTRSQSHRLIP 420
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 28.7 bits (61), Expect = 0.86
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 173 SDGFSVSVIS-YGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRI 349
+DG V ++ YG I+ P+ S+ ++ F E D Y N +LG GR
Sbjct: 307 ADGHYVRMVDFYGQPRLYIRSPEA---DSERIINFPEDDPYYNEFDAFLGVVQGRYPPSR 363
Query: 350 GGAKFSIDGTTYQLANNI 403
+KF TY+L I
Sbjct: 364 ILSKFDDGAKTYELTKII 381
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 360 FAPPILLAQRPTVVPKYGVFLFTYPSS 280
F PP+ Q P +P + ++L ++PS+
Sbjct: 464 FVPPVRTNQIPRQIPSHSIWLSSFPSA 490
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -2
Query: 327 TVVPKYGVFLFTYPSSSSKPRTTSLVIPYLSGT*IDCMVAPYEMTDTEKPSD 172
T+V +F TYP+S ++ T +VIP +GT + ++ E+ + P++
Sbjct: 343 TIVSGSEIFNTTYPASGTRTGTVEVVIP-TAGTVTETEISGSELYTSTFPAN 393
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 703 SVYNKDMVVDLLDTSFVASQIKIRMVCQIYN 611
+VYN + V +LL + +A Q+ + +VC Y+
Sbjct: 749 NVYNPEKVKNLLKEAKLADQLPLILVCDRYD 779
>SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 72
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 71 RLNHSF*IINMVTLNVE 121
RLNHS +INM +NVE
Sbjct: 29 RLNHSLQLINMSNMNVE 45
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 143 ETVSKFTWRASDGFSVSVISYGAT 214
E +S+ A DG++VS+ +YG T
Sbjct: 554 EEISQLIQSAIDGYNVSIFAYGQT 577
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 26.2 bits (55), Expect = 4.6
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +2
Query: 59 IVYGRLNHSF*IINMVTLNVEDFGQHHGETVSKFTWR--ASDGFSVSV---ISYGATIQS 223
IV G L+H I + VTL + +HH + V R ++ FS S I + Q
Sbjct: 223 IVTGGLDHRIVIRDSVTLEPQHCWKHHRDAVMGLAMRRGTNEMFSCSADRSIKVWSLDQM 282
Query: 224 IQVPDKYGITSDVVLGFDEL 283
+ +G DV+ G D L
Sbjct: 283 SYIETLFG-HQDVIFGVDAL 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,304
Number of Sequences: 5004
Number of extensions: 64569
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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