Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25e07
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...   107   8e-24
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...   107   8e-24
AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score =  107 bits (257), Expect = 8e-24
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 1/178 (0%)
 Frame = +2

Query: 179 GFSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGA 358
           G + +++ +GAT+  +  PDK G   D+VLGFD +D +  ++   +G TVGR ANRI  +
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEF-EKDAASIGKTVGRVANRIKNS 71

Query: 359 KFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTK-VIFSYLSKDGEEGYPGDLI 535
               DG  Y +  N G  +LHGG NG     W       + V FS  + + ++G PGD  
Sbjct: 72  TLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPGDAK 131

Query: 536 TNITYEVTEDNALHVDFMSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVINADK 709
            ++TY V + N L ++  +            H+Y+NL G +T    +  H   + AD+
Sbjct: 132 IDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEMEADE 185


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score =  107 bits (257), Expect = 8e-24
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 1/178 (0%)
 Frame = +2

Query: 179 GFSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGA 358
           G + +++ +GAT+  +  PDK G   D+VLGFD +D +  ++   +G TVGR ANRI  +
Sbjct: 13  GLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEF-EKDAASIGKTVGRVANRIKNS 71

Query: 359 KFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTK-VIFSYLSKDGEEGYPGDLI 535
               DG  Y +  N G  +LHGG NG     W       + V FS  + + ++G PGD  
Sbjct: 72  TLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPGDAK 131

Query: 536 TNITYEVTEDNALHVDFMSXXXXXXXXXXXXHSYFNLAGHETGVQEIYNHIFVINADK 709
            ++TY V + N L ++  +            H+Y+NL G +T    +  H   + AD+
Sbjct: 132 IDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEMEADE 185


>AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical
           protein Y68A4A.7 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 321 VPKYGVFLFTYPSSSSKPRTTSLVIPYLSGT 229
           +P YG+F     S  S P T   +I YL GT
Sbjct: 90  LPMYGMFFVGILSLFSVPNTVQFLIVYLMGT 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,720,270
Number of Sequences: 27780
Number of extensions: 367372
Number of successful extensions: 936
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)