Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25e06
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 37 0.003
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 33 0.037
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.20
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.61
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 29 0.81
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.4
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 28 1.4
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 27 1.9
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 1.9
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 4.3
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 4.3
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 5.7
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 5.7
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.5
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 7.5
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 7.5
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 7.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.9
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 9.9
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 9.9
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 9.9
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 36.7 bits (81), Expect = 0.003
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +3
Query: 441 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTV-IAP-LT 614
VTP P S S PP +T T S P +++ S T + T +ST + P +
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 615 PSNTTGTLSPPCTKATS 665
P++T+ T +PP +TS
Sbjct: 361 PTSTSSTSTPPPPASTS 377
Score = 35.9 bits (79), Expect = 0.005
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +3
Query: 441 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP-LT 614
+TP P S S+P P T+ + S P T ST + + + S+T + P +
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 615 PSNTTGTLSPPCTKATS 665
P++T+ T +PP +TS
Sbjct: 307 PTSTSSTSTPPPPASTS 323
Score = 35.5 bits (78), Expect = 0.007
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 447 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPS- 620
P T + S P P T+ TS S PP NST + +T V + SST P S
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPPPPAST 322
Query: 621 NTTGTLSPPC-TKATSCS 671
++TGT S P + +TSC+
Sbjct: 323 SSTGTSSSPLPSTSTSCT 340
Score = 34.3 bits (75), Expect = 0.016
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +3
Query: 441 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTV-IAPLTP 617
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414
Query: 618 --SNTTGTLSPPCTKATS 665
S++T + CT +TS
Sbjct: 415 PTSSSTPLTTTNCTTSTS 432
Score = 31.5 bits (68), Expect = 0.11
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 441 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 617
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 618 SNTTGTLSPPCTKATS 665
T+ P T +TS
Sbjct: 250 -----TVPPTSTSSTS 260
Score = 29.1 bits (62), Expect = 0.61
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 432 LHSVTPKTKPARKSPGSLPPCW-KTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 608
L++ TP T P S S W TT T S T+ST +T T ++ +
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 609 LTPSNTTGTLS 641
T S++T T S
Sbjct: 658 STSSSSTATSS 668
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +3
Query: 438 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMT--VSSTVIAPL 611
S P T + + S+PP +T + + PP + S+ S+ + SS+ +
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLST 389
Query: 612 TPSNTTGTLSPPCTKATS 665
+ S TT T PP +T+
Sbjct: 390 STSCTTSTSIPPTGNSTT 407
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +3
Query: 438 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMT--VSSTVIAPL 611
S P T + + S+PP +T + + PP + S+ S+ + SS+ +
Sbjct: 276 SPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPST 335
Query: 612 TPSNTTGTLSPPCTKATS 665
+ S TT T PP +T+
Sbjct: 336 STSCTTSTSIPPTGNSTT 353
Score = 25.4 bits (53), Expect = 7.5
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +3
Query: 438 SVTPKTKPARKSPGSLPPCWKTTE--YTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPL 611
SV + P +P + C +T YTS +T + T + T + PL
Sbjct: 432 SVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPL 491
Query: 612 TPSNTTGTLSPPCT 653
T +N T + S P T
Sbjct: 492 TTTNCTTSTSVPYT 505
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.1 bits (72), Expect = 0.037
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 501 TTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKATS 665
+T TS PP T+ ++ T ++T + P T NTT T +PP T S
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNS 117
Score = 32.7 bits (71), Expect = 0.050
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +3
Query: 435 HSVTPKTKPARKSPGSLPPCWKTTEY--TSRSCPPKT--NST*SSITRKVLVMTVSSTVI 602
H+ T T P S + TT T+ + PP T NST + + V T +TV+
Sbjct: 77 HNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNT--TTVV 134
Query: 603 APLTPSNTTGTLSPPCTKATSCS 671
P T NTT T+ PP T A + S
Sbjct: 135 PPTTHVNTT-TVVPPTTHANTTS 156
Score = 30.3 bits (65), Expect = 0.26
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 483 LPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCT 653
+PP + T+ + PP T+ ++ + ++T P T N+T T+ PP T
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTT 126
Score = 29.9 bits (64), Expect = 0.35
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 441 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPS 620
V P + + ++PP T+ T+ + PP T+ ++ T S+T + P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 621 NTTGTLSPPCT 653
T T+ PP T
Sbjct: 128 VNTTTVVPPTT 138
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.20
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 550 QVLFVFGGHDLEVYSVVFQHGGK 482
+V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.61
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 167 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 310
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 655 FVHGGLKVPVVFEGVSGAITVDDTVIT 575
F H + V G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 498 KTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLS-PPCTKAT 662
+TTE T+ P T ++ S T ++ T T I P+ P N + ++S PP T T
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAPPTTSFT 905
Score = 25.0 bits (52), Expect = 9.9
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Frame = +3
Query: 453 TKPARKSPGSLPPCWKTTEYTSRSCPP--KTNST*SSITRKVLVMTVSSTVIA-----PL 611
T A +P S +T TS S P NST ++ + +V+ST PL
Sbjct: 316 TTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPL 375
Query: 612 TPSNTTGTLSPPCTKATSCS 671
T N+T S T TS +
Sbjct: 376 TSVNSTSATSASSTPLTSAN 395
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 600 IAPLTPSNTTGTLSPPCTKATS 665
+ PL PS+ +G LSPP KA S
Sbjct: 146 VHPLRPSHVSGPLSPPEPKAAS 167
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 134 QLYMSVIIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 250
Q+++++++ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 570 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 421
PF+L++ R C D +KY L+ + F + L+V +L A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 4.3
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = -3
Query: 592 DDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLL 413
D + + +R+ + GG E YS + Q KL + N VVLL
Sbjct: 1233 DTERVLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKE-----LAQRLNTFNAHVVLL 1287
Query: 412 VDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 305
D + G + + L LL +D +++ +V FDDF+
Sbjct: 1288 QD-IHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 523 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 422
DLE +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 371 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 463
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 604 AITVDDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGK 482
A V+D I R + + + +V + GH+ E+YS+ F GK
Sbjct: 350 ATGVEDQQI-RIWDIAQKRVYRLLTGHEQEIYSLDFSKDGK 389
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 7.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -1
Query: 228 SLITSPFFSFRYSEHLAIAVSYSP------MMTLIYSCSASTSSVLGASVALEASAHTAR 67
+LI SP S S ++ V S M L+Y+ S + +S+ A + L+ + T
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343
Query: 66 TKANKVSLI 40
+ N VSLI
Sbjct: 344 FQENVVSLI 352
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 7.5
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Frame = +2
Query: 314 VKSYFPIQFRVIFTEQTVKLINKRDHHALKL----IDQQNH-NKIAFGDSKDKTSKKVSW 478
+K Y P + + VK IN+ D LKL + N + I+FG KD SK +S
Sbjct: 139 IKKYSPTSLEL----EQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSL 194
Query: 479 KFTPVLENNRVYFKIMSTEDKQYL-KLDN-TKGSSDDRIIYGDSTADTFKH 625
P+L + + F + Y K +N SS D + DS A+ KH
Sbjct: 195 VTIPILYLDFLQFSFPVVFQRSYYPKSENRVYYSSFDLELNLDSPAE-LKH 244
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 353 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 532
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 533 EDKQYLK 553
+ ++K
Sbjct: 202 DGFDFIK 208
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 171 VSYSPMMTLIYSCSASTSSVLGASVAL 91
+S++ +T + C AST +LGA AL
Sbjct: 312 ISHAGSLTNLSKCPASTVQILGAEKAL 338
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.9
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 471 SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPC 650
SP S T+ S S P T+S+ SS + + + SST + + S+ + S
Sbjct: 221 SPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSS 280
Query: 651 TKATSCS 671
+ TS S
Sbjct: 281 SSPTSTS 287
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 574 RTFRVIELQVLFVFGGHDLEVYSVVFQ 494
R +RV + L+ GH L +YSV+++
Sbjct: 530 RIWRVSTGECLYHLRGHSLRIYSVLYE 556
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 228 SLITSPFFSFRYSEHLAIAVSYSPMMTLIYSCSASTSSV 112
SL+ S FFS YSE + + + IYS S S S+
Sbjct: 6 SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 522 SCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKATSC 668
SC P + SS+ TV+ + L ++ TGT+ P T + +C
Sbjct: 76 SCIPSASLLSSSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,187
Number of Sequences: 5004
Number of extensions: 63274
Number of successful extensions: 293
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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