Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25e05
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 38 7e-04
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 32 0.049
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 32 0.065
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 32 0.065
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 31 0.11
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 31 0.15
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 30 0.20
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 29 0.34
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 29 0.46
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 29 0.46
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.46
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 28 1.1
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 28 1.1
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 28 1.1
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 27 1.4
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 2.4
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.4
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 2.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 27 2.4
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.2
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 3.2
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 26 3.2
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.2
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 26 4.2
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 4.2
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 5.6
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 5.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 5.6
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 25 7.4
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 7.4
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 25 7.4
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 25 7.4
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 25 7.4
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 25 7.4
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 7.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.4
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 7.4
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.8
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 25 9.8
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||... 25 9.8
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ... 25 9.8
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 9.8
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 9.8
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 9.8
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 25 9.8
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 9.8
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 38.3 bits (85), Expect = 7e-04
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +3
Query: 309 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDRE---EMAKDYYREKQY- 476
DKR+KRS D+ D H+ K+ K D E +MAKD +E+QY
Sbjct: 822 DKRNKRSKNDEESDGKSLSAGHVLMQLRKAANHALLFRKFYDDEKLKQMAKDIMQEEQYK 881
Query: 477 -YREKDIYREKEMFRDKETYR 536
E+ IY + E+ D E +R
Sbjct: 882 NANEQYIYEDMEVMSDFELHR 902
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 32.3 bits (70), Expect = 0.049
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 10/128 (7%)
Frame = +3
Query: 156 SNYEDDQSEDGE------LARSPIHDEMDFSLSDEDRD-NPDALIIKPPQAV---IRTTH 305
S Y D + +G+ L R HD D + R +P + + P+ IR+
Sbjct: 172 STYYDSRERNGKRTSRSTLDRKRFHDASDTERNRYGRSPSPHSRFSEKPRGERYDIRSYS 231
Query: 306 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQYYRE 485
R HK +D+Y+ T R+E+ + RD + ++ R R ++ YREK Y
Sbjct: 232 RS--HKERYEDRYRPTRRRERHYRTRDDEGFDEFGR---SRDGRWRESRTSYREKHRYDR 286
Query: 486 KDIYREKE 509
+ E +
Sbjct: 287 DALSSESD 294
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.9 bits (69), Expect = 0.065
Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +3
Query: 306 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAK----DYYREKQ 473
R+K KR K + K +E++ +R +E++ ++ ++ +EE K + +Q
Sbjct: 592 REKEKKRDKKKQLKLAKEEERQRREAER-LAEQAAQKALEAKRQEEARKKREEQRLKREQ 650
Query: 474 YYREKDIYREKEMFRDKETYREKEL 548
+++++ R+K + K+ REK+L
Sbjct: 651 EKKQQELERQKREEKQKQKEREKKL 675
Score = 30.7 bits (66), Expect = 0.15
Identities = 18/72 (25%), Positives = 40/72 (55%)
Frame = +3
Query: 330 AKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQYYREKDIYREKE 509
AK + + ++E++ L R+++K K++ ++ REE K REK+ +++ ++
Sbjct: 631 AKRQEEARKKREEQRLKREQEK----KQQELERQKREEKQKQKEREKKLKKQQQEADREK 686
Query: 510 MFRDKETYREKE 545
M R++ E+E
Sbjct: 687 MAREQRLREEEE 698
Score = 29.9 bits (64), Expect = 0.26
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +3
Query: 291 IRTTHRDKRHKRSAKDKYKDTSRK--EKKHLFRDRDKSEKS--KRELIKTSDREEMAKDY 458
++ ++R +R A+ + ++K E K R K E+ KRE K E K
Sbjct: 604 LKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKRE 663
Query: 459 YREKQYYREKDIYREKEMFRDKETYREKEL 548
++KQ REK + ++++ ++ RE+ L
Sbjct: 664 EKQKQKEREKKLKKQQQEADREKMAREQRL 693
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/102 (16%), Positives = 46/102 (45%)
Frame = +3
Query: 237 DEDRDNPDALIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRE 416
+ R + L + Q + +++ K+ + + K K+++ L +R K E+ +++
Sbjct: 611 ERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQEL--ERQKREEKQKQ 668
Query: 417 LIKTSDREEMAKDYYREKQYYREKDIYREKEMFRDKETYREK 542
+ ++ ++ REK ++ E++ ++ REK
Sbjct: 669 KEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREK 710
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 31.9 bits (69), Expect = 0.065
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Frame = +3
Query: 279 PQAVIRTTHRDKRHKRSAKDKYK-DTSRKEKKHLFRDR------DKS-EKSKRELIKTSD 434
P I+ + + K KY D+ RK K+ RDR D+S E+S E +
Sbjct: 138 PLLAIKQQEQKQLQTLMEKRKYSLDSDRKSKERRHRDRHHRSNQDRSRERSDNEQHSSDK 197
Query: 435 REEMAKDYYREKQYYREK---DIYREKEMF 515
RE + Y ++ +RE+ D YR ++ +
Sbjct: 198 REHSRRSYRNDRNNWRERTHNDRYRHRDKY 227
Score = 28.3 bits (60), Expect = 0.80
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 312 KRHKRSAKDKYKDTSR--KEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQYYRE 485
K++ R+++ + S + + H F RD ++R S ++M +D +E R
Sbjct: 254 KKYVRTSRQYSRSPSPDFRTRNHQFHSRDSQPITQRHTDIESRLQKM-QDNAKELDESRR 312
Query: 486 KDIYREKEMFRDKETYREKE 545
K I ++ RD+E + EKE
Sbjct: 313 KKIELLEKKERDEEQFLEKE 332
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 31.1 bits (67), Expect = 0.11
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +3
Query: 303 HRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQ 473
+++K+ +S +D + DTS EK+ L D+++K +R+ I+ D E +A R K+
Sbjct: 55 NKEKKEGQS-EDMFSDTSEDEKRTL--PNDEAQK-RRDFIENGDAERLAHKGLRNKE 107
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 30.7 bits (66), Expect = 0.15
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Frame = +3
Query: 201 SPIHDEMDFSLSDEDRDNPDALIIKPPQAVIRTTHRDKRHKR------SAKDKYK-DTSR 359
S + M + DEDR DA + R H K+ + SA D K +
Sbjct: 137 SEFSEWMQKAEEDEDRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKKLEKIT 196
Query: 360 KEKKHLFRDRDKSEKSKRELIKTSDREEMAK 452
K+KK + +DK SK+ +SD+EE K
Sbjct: 197 KKKKKEHKKKDKESSSKKRKSGSSDKEEKKK 227
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 30.3 bits (65), Expect = 0.20
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 306 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEM 446
+DK K+S + K D+ +++K RD++ + SK L K S +++
Sbjct: 154 KDKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSGLKKVSGTKKV 200
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 312 KRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQ 473
K K S K+ K K+KK +DK +K + L + K R+K+
Sbjct: 129 KVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKE 182
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.5 bits (63), Expect = 0.34
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = +3
Query: 222 DFSLSDEDRDNPDALIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSE 401
D+S S D +P+A + KP V + +D S+K K ++D+ E
Sbjct: 386 DWSKSYIDYSDPNAEVAKPAPVVAPAAPTVEAEVNGVED-----SKKRKSVESSEKDEDE 440
Query: 402 KSKRELIKTSDREEMAKDYYREKQYYREKDIYREK 506
+K+E R++ AK +EK+ +EK ++K
Sbjct: 441 AAKKE---EKRRKKEAKKEKKEKKEKKEKKEKKKK 472
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 29.1 bits (62), Expect = 0.46
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 192 LARSPIHDEMDFS--LSDEDRDNPDALIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKE 365
+A S + D +DF L D D D+P +I K + V + + + KRS++ + S KE
Sbjct: 460 VALSILRDRIDFDEFLIDYDADSPTKVIGK--RNVSKASRTGQGRKRSSRSSWNKPSAKE 517
Query: 366 KK 371
++
Sbjct: 518 QR 519
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.46
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 315 RHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQYYREKDI 494
R + S ++ Y D SR L R R +S + LI++ D+ ++ + YR +
Sbjct: 686 RERSSNRNSYSDLSRSSS--LSRGRSRSYTPEGRLIESEDKGYRSRSSSPASRKYRSRQR 743
Query: 495 YR 500
YR
Sbjct: 744 YR 745
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.46
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Frame = +3
Query: 231 LSDEDRDNPDALIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFR-DRDKSEKS 407
+ EDRD LI + I +R+KR D +DT+ K+K L D + S
Sbjct: 1249 IMSEDRDK---LIRGRQKTSIVAKYRNKRELPEDSDDKQDTASKDKNSLETIDEKMEDAS 1305
Query: 408 KRE-LIKTSDREEM----AKDYYREKQYYREKDIY 497
K E KT D EM + + Y EKD Y
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEKPDYAEEKDPY 1340
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 453 LWPFLLDQKFL*VLF*IFQTYHGP 382
LWP L Q+F+ V+F I TY+ P
Sbjct: 436 LWPLLHPQRFVDVVFAIDSTYNDP 459
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.9 bits (59), Expect = 1.1
Identities = 26/95 (27%), Positives = 47/95 (49%)
Frame = +3
Query: 237 DEDRDNPDALIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRE 416
+++R N + L K +A R +D+ +R + K+ KE+ L ++ E +R
Sbjct: 109 EQERFNRELLEKKRIEAE-RQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRR 167
Query: 417 LIKTSDREEMAKDYYREKQYYREKDIYREKEMFRD 521
L +E++ D R+++ REK R KE F+D
Sbjct: 168 L----KQEQI--DAKRKEEEAREK---RMKETFKD 193
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +3
Query: 366 KKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQYYREKDIYREKEMFRDKETYREKE 545
KK +++ E+S E + ++ + ++ +K I E++ +D+E R+KE
Sbjct: 81 KKRNVEEQNLIEQSITESQRIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKE 140
Query: 546 L 548
L
Sbjct: 141 L 141
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 453 LWPFLLDQKFL*VLF*IFQTYHGP 382
LWP L Q+F+ V+F I TY+ P
Sbjct: 436 LWPLLHPQRFVDVVFAIDSTYNDP 459
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +3
Query: 357 RKEKKHLFRDRDKSEKS------KRELIKTSDREEMAKDYYREKQYYREKDI 494
+K +K +F +D S + +RE+ + + R E K + +E++ REK+I
Sbjct: 88 KKVEKKMFMGKDPSADTSFLPDAEREIRENAKRAEYRKQWLKEQEQIREKEI 139
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 306 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYR-EKQYYR 482
+DK H + KDK K+K+H +DK E K K + K++++ K+ +
Sbjct: 369 KDKEHHKGPKDKEHHKGPKDKEHHKGPKDK-EHHKGPKDKEHHKGPKDKEHHQGPKEKHN 427
Query: 483 EK 488
E+
Sbjct: 428 ER 429
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 306 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTS 431
+DK H + KDK K+K+H ++K + + +++S
Sbjct: 396 KDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQSS 437
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 309 DKRHKRSAKDKYKDTSRKEKKHLFRDRDK 395
DK H + KDK K+K+H +DK
Sbjct: 361 DKEHHKGPKDKEHHKGPKDKEHHKGPKDK 389
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 2.4
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 18/127 (14%)
Frame = +3
Query: 216 EMDFSLSDEDRDNPDAL-IIKPPQAVIRT-THRDKRHKRSAKDKY----KDTSRKEKKHL 377
E+ + +D + NP+ L +I+ R + KR K+ +KD+Y K+ +RKE++ L
Sbjct: 292 EIPINAADLEGINPELLPVIEEEIRSFRDQSAMKKREKQRSKDEYASLYKEYTRKEQEKL 351
Query: 378 FRDRDKSEK--SKRELIK---------TSDREEMAKDYYREKQYYREKDIYREKEMFRDK 524
+ D + SK + + + + + + E+ YY EK R K+ +
Sbjct: 352 RKQNDDLQNLLSKHRISRIPMSTVNAFLRAEDSIPESFSDEQAYYEEK---RRKDQLEAE 408
Query: 525 ETY-REK 542
E Y RE+
Sbjct: 409 EYYARER 415
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 378 FRDRDKSEKSKRELIKTSDREEMAKDYYREKQYYREKDIYREKEMFRDKETYREKEL 548
F D D + + E S RE M++ + K Y E+ EKE + D+ ++++
Sbjct: 187 FEDSDAENEKEGEGAHKSKREVMSEIIAKSKHYKAERQ--AEKERYEDEREKLDEQM 241
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +3
Query: 294 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYRE 467
RT +K + AK ++T K++ +RD +K++RE + + +EE ++ R+
Sbjct: 670 RTIKNNKDMQTKAKRAMRETMVFWKRNERVERDLRKKAEREALDRAKKEEELRESRRQ 727
>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 318 HKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDY 458
H + D K+ K L + ++ E K+E+ K + + + KDY
Sbjct: 22 HAPKEDESVDDNFPKQFKRLLQQKEYHESKKKEIKKGNLKNKKKKDY 68
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 396 SEKSKRELIKTSDRE-EMAKDYYREKQYYREKDIYREKEMFRDKETYREKEL 548
SE ++ + D E E K Y +EKQ E+ +++++ ++ Y EK+L
Sbjct: 19 SELPVKKAFRRGDWEKEREKKYLQEKQQKDEQRELKKRKLEEERLKYEEKKL 70
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +3
Query: 282 QAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIK-TSDREEMAKD- 455
QA+ + +HK + + + +++ D + + L+K T R E +D
Sbjct: 289 QALFFKLKLNGKHKGTKTHVFDGKTLFPTNRVYQVCDIVDPTIAPLLKDTQLRSECHRDT 348
Query: 456 -YYREKQYYREKDIYREK 506
+YR +YY+ +D+ REK
Sbjct: 349 GWYRSGRYYKVRDLMREK 366
>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 26.2 bits (55), Expect = 3.2
Identities = 24/114 (21%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Frame = +3
Query: 153 MSNYEDDQSEDGELARSPIHD--EMDFSLSDEDRDNPDALIIKPPQAVIRTTHRD-KRHK 323
M + D + D +A+ IH+ + + S D + ++P + + R+ + H
Sbjct: 1 MESSLDRLNFDEFVAKLLIHESKKKNKSFVDHGYIEKEKTKLRPNKVFLNNMVRNVQSHN 60
Query: 324 RSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQYYRE 485
R ++ +D RK+ + +D D + S+R S R ++ + ++K+ Y+E
Sbjct: 61 RGINNRRRDQKRKQLISIKQDNDLNVSSER----LSRRIDVPRPTSKKKRLYKE 110
>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -2
Query: 392 ITVPEEMLLFFSRCVFVFIFCRSLVALVPVCGSDHCLRRLDNQRIWVIS 246
I + E + F ++C + C S V+L+ +C N I ++S
Sbjct: 48 IALCNEYIRFLAKCFLYILRCMSTVSLLSSAHKMNCCNFYSNYNILLVS 96
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +3
Query: 156 SNYEDDQSEDGELARSPIHDEMDFSLSDE-----DRDNPDALIIKPPQAVIRTTHRDKRH 320
SN +D+ E+ E+ S I D++ L+ + ++D P + K + +R ++ +K+
Sbjct: 51 SNSSEDEIEE-EVQESTIADDIADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKD 109
Query: 321 KRSAKDKYKDTSRKE 365
+ + ++ RKE
Sbjct: 110 SKLRTSRRRERLRKE 124
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 423 KTSDREEMAKDYYREKQYYREKDIYREKEMFRDKETYRE 539
++ +RE +++ R+++ KD R KE+F D +R+
Sbjct: 373 RSFEREFLSEQIQRQEKNKSYKDKKRLKELFNDPRKFRQ 411
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 279 PQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKS-KRELIKTSDREEMAKD 455
P+ + ++R + + K ++ R+E++ D D ++ KR + R++ ++
Sbjct: 947 PEEEMERIEEEERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTTKSITKRQQRREE 1006
Query: 456 YYREKQ 473
REK+
Sbjct: 1007 MVREKE 1012
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 360 KEKKHLFRDRDKSEKSKR--ELIKTSDREEMAKDYYREKQYYREKDIYREKEMFRDKE 527
+E++ L R K E+ +R E + +D + ++ Y R + ++ RE EM R+KE
Sbjct: 956 EEERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTTKSITKRQQRRE-EMVREKE 1012
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/69 (18%), Positives = 32/69 (46%)
Frame = +3
Query: 306 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQYYRE 485
+ K K+++K+K +S++++ ++ K + L ++R+E + + + E
Sbjct: 98 KPKAKKKNSKEKISKSSKQDEHKTDVHKESVSKLSKNLESRNNRDENSAKREKNNSHQVE 157
Query: 486 KDIYREKEM 512
D EM
Sbjct: 158 ADTNNATEM 166
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 5.6
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Frame = +3
Query: 165 EDDQSEDGELARSPIHDEMDFSLSDEDRDNPDALIIKPPQAVIRTTHRDKRHKRSAKDKY 344
ED+ E+ E A + +E D +ED ++ D R KR + ++++
Sbjct: 97 EDNVEENEEEADANEEEEEDEEDDEEDEEDEDE----------SGGGRRKRARHDRRNQF 146
Query: 345 KDTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQYYREKDIYREK----EM 512
D + + D+ ++ RE EE+ DY + + +RE D R++ +
Sbjct: 147 LDIEAEVDEDEEELEDEEDEIGRE--DGFIEEEVGADYVGDDRRHRELDRQRQELQSVDA 204
Query: 513 FRDKETYREK 542
R E YREK
Sbjct: 205 ERLAEEYREK 214
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 297 TTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRE 416
T + +R +RSA+ + T ++ + ++++SEKS+ E
Sbjct: 154 TELKKRRQERSARSVSERTRKRSPVSDYEEQNESEKSEEE 193
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 381 RDRDKSEKSKRELIKTSDREEMAKDYYREKQY 476
RDRD+S +S R +S DY R Y
Sbjct: 149 RDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPY 180
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 499 ERKKCLETKKHIEKKSC 549
+RK C ET K +E K C
Sbjct: 559 DRKSCFETYKGVENKFC 575
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 306 RDKRHKRSAKDKYKDTSRKEKK 371
RD RHKRSA + RK++K
Sbjct: 5 RDSRHKRSATGAKRAQYRKKRK 26
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 7.4
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Frame = +3
Query: 204 PIH-DEMDFSLSDEDRDNPDALIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLF 380
P H D+ D + E+ + D I P+ ++ + KDK + +K++K
Sbjct: 18 PDHLDDFDGFMGLEEIEGVD--IKYQPKGAMKEVIYELPEVHEKKDKKPEKRKKDQKEAS 75
Query: 381 RDRDKSEKSKRELIKTSDREEMAKDYYREKQYYREKD 491
+ K +++ + TS ++ Y E E+D
Sbjct: 76 EKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEED 112
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 306 RDKRHKRSAKDKYKDTSRKEKK 371
RD RHKRSA + RK++K
Sbjct: 5 RDSRHKRSATGAKRAQYRKKRK 26
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 303 HRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKREL 419
HR+KR R K + K+ S K+K + +K + +L
Sbjct: 552 HREKRQLRKEKPEKKNNSTKQKDLITVSHNKGTTAIEDL 590
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/57 (19%), Positives = 26/57 (45%)
Frame = +3
Query: 348 DTSRKEKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQYYREKDIYREKEMFR 518
D+ + ++ RD+ + + D + + RE +YYR+++ +E+ R
Sbjct: 3 DSRQNSQREDNYSRDRRSRFTEDSYSRRDSQRSGNEAPRESRYYRKEEHLQERSRSR 59
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/46 (23%), Positives = 27/46 (58%)
Frame = +3
Query: 414 ELIKTSDREEMAKDYYREKQYYREKDIYREKEMFRDKETYREKELY 551
+++K D+ + +D+ ++ Y R + +++ + +DK EK+LY
Sbjct: 137 KIVKDVDKLLLKRDH-KQLDYDRHRSSFKKLQEKKDKSLKDEKKLY 181
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/52 (19%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 393 KSEKSKRELIKTSDREEMAKD-YYREKQYYREKDIYREKEMFRDKETYREKE 545
K++ + ++LI++ +D Y+R K+ +++ + K++ + ++ +EK+
Sbjct: 5 KAQSALQKLIESQKNPNANEDGYFRRKRLAKKERPFEPKKLVQQQQRLKEKK 56
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/51 (19%), Positives = 24/51 (47%)
Frame = +3
Query: 264 LIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRE 416
++ KPP+ ++ +RH R + ++E K + ++K + +E
Sbjct: 15 IVEKPPKQLVEVKRSVQRHARGFPAVSRTLPKRESKSMSAYKEKMLRKNKE 65
>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 289
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 399 EKSKRELIKTSDREEMAKDYYRE-KQYYREK 488
EK+ +KT D+++ A Y K Y REK
Sbjct: 59 EKAAEMQLKTDDKDDAASTYVEAFKSYRREK 89
>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/61 (21%), Positives = 31/61 (50%)
Frame = +3
Query: 363 EKKHLFRDRDKSEKSKRELIKTSDREEMAKDYYREKQYYREKDIYREKEMFRDKETYREK 542
EK+ LF +++ ++ + S R + + E+Q ++KD K+ +R + ++K
Sbjct: 166 EKRRLFAMKNQPDEDGFVTVVRSGRAPVGRPQDAERQLEKKKDTGIHKDFYRFQLREKKK 225
Query: 543 E 545
+
Sbjct: 226 K 226
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 9.8
Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +3
Query: 237 DEDRDNPDALIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSEKSKRE 416
D+ + + + + P+ + + + + K+K + + +EKK ++ KS +
Sbjct: 28 DQFEETEEEIKKRSPEELKQAIEALREKAKEKKEKERILALEEKKTNYKILQKSNDETAQ 87
Query: 417 LIKTSDREEMAKDYYREKQYYREKDIYREK---EMFRDKE 527
++ + +D + +Q E R+K E+ RDK+
Sbjct: 88 AMRKMQDQARLRDLQKIRQQKAEDAEQRKKILAEIERDKK 127
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 362 FSRCVFVFIFCRSLVALVPVCGSDH 288
FS + F+FC ++L+P+ SD+
Sbjct: 679 FSIIMIYFVFCVFYISLIPLHNSDN 703
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 292 SEPHTGTSATRDLQKINTKTHLEKKR 369
++ HTGTS T L+ +K H E K+
Sbjct: 59 NQGHTGTSDTSSLEMELSKLHPESKQ 84
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 471 QYYREKDIYREKEMFRDKE 527
QY ++K+IY KE +KE
Sbjct: 59 QYQKDKNIYEPKENLEEKE 77
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 9.8
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Frame = +3
Query: 321 KRSAKDKYKDTSRKEKKHL--------FRDRDKSEKSKRELIKTSDREEMAKDYYREKQY 476
KRS + S KHL RDRD RE + R++ D Y + Y
Sbjct: 290 KRSRDNNLSRESSVSSKHLDYNSRNYNKRDRDPDRTKYRE-YHSERRKQHRTDRYSDDYY 348
Query: 477 YREKDIYREKEMFRDKETYRE 539
Y+++ D+ T RE
Sbjct: 349 QGRSYSYKKRSHRSDRYTERE 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,636
Number of Sequences: 5004
Number of extensions: 31387
Number of successful extensions: 211
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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