Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d24
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...   136   3e-33
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    32   0.082
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    28   1.0  
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    27   3.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   9.4  

>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score =  136 bits (329), Expect = 3e-33
 Identities = 64/141 (45%), Positives = 95/141 (67%)
 Frame = +2

Query: 224 EVSLAFYALLFSEIVQYSQNRSHSIQDLQFKLSEIGQDVGTRLLDLYFVRERNSKREIKL 403
           +V+L+ +A +FSE++Q  Q++   IQ+ + KL+E G  VG +L++L   RERN KRE ++
Sbjct: 40  DVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKRETRI 99

Query: 404 LNMLLFIKSTLWKVLFGKEADKLEHANDDERTYYIIEKDALVNKFISVPKDKGSLNCAIF 583
           L +L +I S++WK LFGK AD LE + +    Y I++ + L+NKFISVPK+   LNC  +
Sbjct: 100 LGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159

Query: 584 NAGIIEAVLTRSGFPAKVTAH 646
            AGIIE  L  + FP K +AH
Sbjct: 160 LAGIIEGFLDSAQFPCKASAH 180


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 31.9 bits (69), Expect = 0.082
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 305 DLVSNAIDSDYTEQFQKIKGHKRLKR 228
           DL  N+ DSD+ EQ  K +G + LKR
Sbjct: 18  DLTPNSFDSDFVEQLSKFEGKEGLKR 43


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 245 ALLFSEIVQYSQNRSHSIQDLQFKLSEIG 331
           ALL S+   YSQ R  SIQ+++  ++E+G
Sbjct: 211 ALLESQTDTYSQQRMSSIQNIESTITELG 239


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 263 IVQYSQNRSHSIQDLQFKLSEIG 331
           IV+ S N  H   D+Q KL E+G
Sbjct: 109 IVEESPNSQHLAHDIQLKLDELG 131


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/48 (20%), Positives = 26/48 (54%)
 Frame = +2

Query: 290 HSIQDLQFKLSEIGQDVGTRLLDLYFVRERNSKREIKLLNMLLFIKST 433
           HS+QD+     ++G  + + L++L    + + ++ ++ L  L  ++ T
Sbjct: 699 HSLQDISMSSQKLGNGISSELIELQKDMKESYRQLVQELRSLYNLQHT 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,082
Number of Sequences: 5004
Number of extensions: 52219
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)