Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d24
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0444 + 29436021-29436092,29437910-29437998,29438510-294385...   107   6e-24
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487...    30   1.8  
02_05_0396 - 28600855-28601475,28601579-28601761,28601970-286021...    30   1.8  
07_03_0683 + 20671067-20671951,20672030-20672203                       29   4.2  
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829...    27   9.7  

>01_06_0444 +
           29436021-29436092,29437910-29437998,29438510-29438573,
           29439213-29439289,29439358-29439418,29439508-29439615,
           29440139-29440168
          Length = 166

 Score =  107 bits (258), Expect = 6e-24
 Identities = 67/153 (43%), Positives = 88/153 (57%)
 Frame = +2

Query: 191 ILDKPLRKGKGEVSLAFYALLFSEIVQYSQNRSHSIQDLQFKLSEIGQDVGTRLLDLYFV 370
           +LDKPL +G+ EVSL+ +A LFSE+VQY+Q +  +I +L+ +L + G  VG R+L+L   
Sbjct: 13  VLDKPLSRGRQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCH 72

Query: 371 RERNSKREIKLLNMLLFIKSTLWKVLFGKEADKLEHANDDERTYYIIEKDALVNKFISVP 550
           RE                          K AD LE   + E  Y I EK+ LVN+FISVP
Sbjct: 73  RE--------------------------KVADSLEKGTEHEDEYMISEKELLVNRFISVP 106

Query: 551 KDKGSLNCAIFNAGIIEAVLTRSGFPAKVTAHW 649
           KD G+ NC  F AGI   VL  +GFPA VTAH+
Sbjct: 107 KDMGAFNCGAFVAGI--GVLENAGFPAVVTAHF 137


>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
            48730-48840,48935-49195,49415-49638,49735-49855,
            50673-51214,51302-51488,51569-51895,52047-52197,
            52287-52424,52918-53013,53276-53357,54411-54679,
            54769-54882,55050-55288,55488-55715,55799-55951,
            56479-56616,57061-57188,57598-57718,58142-58306,
            59486-59633,59772-59898,60025-60118,60119-60268,
            60577-60624,60712-60819,61040-61114,61225-61275,
            61341-61487,61584-61714,61944-62031,62204-62266,
            62336-62582,62830-62981,63056-63126,63214-63370,
            63520-63687
          Length = 2323

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = +2

Query: 308  QFKLSEIG--QDVGTRLLDLYFVRERNSKREIKLLNMLLFIKSTLWKVLFGKEADKLEHA 481
            Q KLS  G  + +    L L+ +        +   N+L    STL  V+ G +   L ++
Sbjct: 799  QLKLSRSGFLESIWASCLSLFAL---GPAERLDAYNILSLYLSTLKHVILGPDEYDLRNS 855

Query: 482  ND--DERTYYIIEKDALVNK 535
            ND  DE    +++KD+LV K
Sbjct: 856  NDFWDEIRRGLVDKDSLVRK 875


>02_05_0396 -
           28600855-28601475,28601579-28601761,28601970-28602129,
           28602217-28602795,28603044-28603618,28604161-28604176,
           28605566-28605663,28605774-28606286
          Length = 914

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 639 VTFAGNPLLVKTASMMPALKMAQFNEPLSFGTLINLF 529
           +T    P+L+   + MP      +N  L FGT+ N F
Sbjct: 804 ITLTNLPVLIGATASMPPATAVNYNSWLLFGTIFNFF 840


>07_03_0683 + 20671067-20671951,20672030-20672203
          Length = 352

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 464 DKLEHANDDERTYYIIEKDALVNKFISVPKDKGSLNCAIFNAGIIEAVLTRSGFPAKVTA 643
           D+L  A D++  Y +I+  AL    + + +     N  +FNA  +E ++ + G    V  
Sbjct: 143 DELGVAYDEQEDYVVIKHAALFTSTV-MSRLLARPNVKLFNAVAVEDLIVKEGRVGGVVT 201

Query: 644 HW 649
           +W
Sbjct: 202 NW 203


>07_01_0985 -
           8297560-8297610,8297728-8297939,8298327-8298449,
           8298763-8298817,8299940-8300077,8300187-8300261,
           8300339-8300398,8301335-8301392,8301948-8302054,
           8302484-8302558,8302643-8302838,8304222-8304301,
           8308887-8309757,8310672-8310679
          Length = 702

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 251 LFSEIVQYSQNRSHSIQDLQFKLSEIGQD--VGTRLLDLYFVRERNSKR 391
           L + + ++S     ++ D +   S++G D      +LDL+FVR R SKR
Sbjct: 323 LLTMVKKHSHLIGWTVVDAEDDASDVGMDDRFWHEMLDLFFVRGRVSKR 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,912,716
Number of Sequences: 37544
Number of extensions: 283323
Number of successful extensions: 594
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)