Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d24
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.48 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.8  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 491 HHHLHVPVYQLLYQKAP 441
           HHHLH   +Q+LYQ++P
Sbjct: 73  HHHLHH--HQVLYQQSP 87


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 509 IEKDALVNKFISVPKDKGSLNC 574
           ++   LV +F+ VPKD   ++C
Sbjct: 530 VDGQRLVYQFVDVPKDIIEIDC 551


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -1

Query: 517 FLDNIVGPFIIICMFQFISFFTKK 446
           FL  + GP +++ +  ++SF+  +
Sbjct: 216 FLIQVYGPCVLLVVLSWVSFWLNR 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,651
Number of Sequences: 438
Number of extensions: 3403
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)