Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d23
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen...    75   9e-15
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   3.3  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    27   3.3  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   4.3  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   4.3  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   7.5  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   7.5  

>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
           component|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 74.9 bits (176), Expect = 9e-15
 Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
 Frame = +3

Query: 243 EIEERVLKVCKAYDKLS-ASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 419
           + E+R+LKV  ++DK+    ++T  S F NDLGLDSLD VEV+MA+E+EF  +IPD DA+
Sbjct: 34  DAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDAD 93

Query: 420 RLVRPKDIVQYI 455
            +    D + YI
Sbjct: 94  EITSVGDAISYI 105


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 20  NGCCEYFPKCFRW 58
           NG CE++ K FRW
Sbjct: 326 NGACEHYKKSFRW 338


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = +3

Query: 39  FRSAFGGLLRRSTTYRTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTG 218
           FR AF    R      TS    +   +L Q  +  +    I +  A  NG      + T 
Sbjct: 14  FREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTM 73

Query: 219 VQSKLSVQEIEERVLKVCKAYDKLSASQLTVD--SHFMNDLGLDSLDHVEV 365
           +  K+   + EE V +  K +DK     +TV+  +H +  LG + L   EV
Sbjct: 74  MARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLG-ERLSQEEV 123


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 455 NVLDNVFWSDQSLCIT--IRYLKSKFIFHCH 369
           N LDNVF S + L  +  + YL+ +F FHC+
Sbjct: 64  NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 1   DFVSLKKWL-LRIFSEVLSVVYYGDQQRIERP*HVVFRPLRCSKSSAQLKPLSKYT-KVR 174
           D+  LK  + L + S+ + +V+YG +Q        V RP    +      PL +YT KV 
Sbjct: 328 DYTVLKNAMTLNLMSDGIPIVFYGQEQMFNGSHDPVNRPALWDQGYNTDGPLYQYTSKVN 387

Query: 175 PFR 183
             R
Sbjct: 388 KIR 390


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +3

Query: 120 LQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKL 290
           L+++ + +K    +YKS+  ++ +     YS+  + K S++ ++ R+    K  +K+
Sbjct: 131 LEEEMAHLKKKCNVYKSKFEESSLRCKSLYSSNTKLKDSMETMKRRMETETKEMNKI 187


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 183 NGVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGL-DSLDHV 359
           NG P     + G++    VQEIE+  +++ KA  +   SQLT+    +N     +SL   
Sbjct: 285 NGFPVLLSDTAGLRKGEDVQEIEKIGIEIAKA--RAEESQLTLFVFPINYHSFSESLKQS 342

Query: 360 EVIMAMED 383
           E++  ++D
Sbjct: 343 EILETIKD 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,325
Number of Sequences: 5004
Number of extensions: 49391
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)