Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25d23
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-18|CAB60498.1| 133|Caenorhabditis elegans Hypothetical... 112 2e-25
AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical ... 90 1e-18
U00033-7|AAC48302.2| 145|Caenorhabditis elegans Hypothetical pr... 73 1e-13
U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical ... 29 3.0
AL031635-10|CAA21037.2| 492|Caenorhabditis elegans Hypothetical... 28 6.9
AF040655-2|AAB95042.2| 306|Caenorhabditis elegans Serpentine re... 28 6.9
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom... 28 6.9
AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans hom... 28 6.9
AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans hom... 28 6.9
Z92831-1|CAB07367.1| 332|Caenorhabditis elegans Hypothetical pr... 27 9.2
U80028-1|AAN73865.1| 369|Caenorhabditis elegans Serpentine rece... 27 9.2
>AL132860-18|CAB60498.1| 133|Caenorhabditis elegans Hypothetical
protein Y56A3A.19 protein.
Length = 133
Score = 112 bits (269), Expect = 2e-25
Identities = 57/125 (45%), Positives = 78/125 (62%)
Frame = +3
Query: 84 RTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTGVQSKLSVQEIEERVL 263
R +V+ L TV+++ S ++ L P ++ L+ + +EER++
Sbjct: 3 RVAVSAALRTVSVRA-LSNASVQQRVITPILLSAQKPSFQIRQYSAKAPLTKKTLEERIV 61
Query: 264 KVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDI 443
V YDK+ A +LT+DS F DLGLDSLDHVEV+MAME+EFGFEIPDGDA+R P+DI
Sbjct: 62 LVLSLYDKIDAKKLTMDSDFSKDLGLDSLDHVEVVMAMEEEFGFEIPDGDADRFKTPRDI 121
Query: 444 VQYIA 458
QYIA
Sbjct: 122 FQYIA 126
>AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical
protein F16B4.6 protein.
Length = 246
Score = 90.2 bits (214), Expect = 1e-18
Identities = 44/78 (56%), Positives = 59/78 (75%)
Frame = +3
Query: 225 SKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIP 404
+KL +E+ V+ A +S+++LT+DS F DLGLD LDHVEV+MA+E+EFGFEIP
Sbjct: 165 AKLLQKEVFRFVIVTSSA---ISSTKLTMDSDFSTDLGLDFLDHVEVVMAIEEEFGFEIP 221
Query: 405 DGDAERLVRPKDIVQYIA 458
DGDA+R P+DI+QYIA
Sbjct: 222 DGDADRFKTPRDILQYIA 239
>U00033-7|AAC48302.2| 145|Caenorhabditis elegans Hypothetical
protein F37C12.3 protein.
Length = 145
Score = 73.3 bits (172), Expect = 1e-13
Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Frame = +3
Query: 228 KLSVQEIEERVLKVCKAYDKLSA---SQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFE 398
+L+ +++E+RVLK +++D+ A S L +D+ D G DSLD VE++MA+EDEFGFE
Sbjct: 59 QLTFKQVEDRVLKAVRSWDRFPADKESLLKLDADLSKDFGFDSLDQVEIVMALEDEFGFE 118
Query: 399 IPDGDAERLVRPKDIVQYI 455
IP D+++ +D +YI
Sbjct: 119 IPLQDSDKFKTIRDAFKYI 137
>U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical
protein C56C10.7a protein.
Length = 401
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 321 FMNDLGLDSLDHVEVI-MAMEDEFGFEIPDGDAERLVRPKDIVQYI 455
F+ + LD H V +A EDEFG D +L++PKDI Q++
Sbjct: 205 FLEKVELDPSQHYNVTSIAHEDEFG------DVGKLLKPKDIRQFL 244
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 297 SQLTVDSHFMNDLGLDSLDHVEVIMAME 380
SQL D++ ++DLGLDSL VE+ A+E
Sbjct: 2206 SQLNADAN-LSDLGLDSLMGVEIKQALE 2232
>AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical
protein ZC178.1 protein.
Length = 542
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 282 DKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVR 431
+KL + +L + + + LD VE++M++ED G + + D+ LVR
Sbjct: 152 EKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDIIGVVLEELDSVELVR 201
>AL031635-10|CAA21037.2| 492|Caenorhabditis elegans Hypothetical
protein Y47D3B.4 protein.
Length = 492
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 39 FRSAFGGLLRRSTTYRTSVTCRLS-TVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYST 215
+ +F +T + +LS +VA Q FST +A YKS+ + H+
Sbjct: 404 YGKSFSSTATVATVFNHFALHKLSPSVAKSQYFSTSEALKLHYKSECPWESRNECHQLEY 463
Query: 216 GVQSKLSVQEIEERVLK 266
V S+ + EER+ K
Sbjct: 464 DVIEDTSLDKYEERLRK 480
>AF040655-2|AAB95042.2| 306|Caenorhabditis elegans Serpentine
receptor, class x protein111 protein.
Length = 306
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 506 FWTSCIFETITNQTQNCIFLIYNWPKSIV 592
F CI +T++N ++L+YN P +++
Sbjct: 42 FHVMCISKTVSNSLHILVYLLYNGPSALL 70
>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform a protein.
Length = 1273
Score = 27.9 bits (59), Expect = 6.9
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +3
Query: 39 FRSAFGGLLRRSTTYRTSV--TCRLSTVALQQKFSTIKAAVKIYKSQA--LQNGVPQSHR 206
F+S F GLL RST ++ C+ S V+L S +K A + +K+ A Q V +
Sbjct: 67 FQSEFDGLLARSTAAENALIDICK-SIVSLPDPKSLLKGA-EAWKNDAEKTQKAVEEREE 124
Query: 207 YSTG-VQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMN 329
++ ++++ + +KV K DKL+ + D N
Sbjct: 125 LKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIEN 166
>AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform b protein.
Length = 619
Score = 27.9 bits (59), Expect = 6.9
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +3
Query: 39 FRSAFGGLLRRSTTYRTSV--TCRLSTVALQQKFSTIKAAVKIYKSQA--LQNGVPQSHR 206
F+S F GLL RST ++ C+ S V+L S +K A + +K+ A Q V +
Sbjct: 67 FQSEFDGLLARSTAAENALIDICK-SIVSLPDPKSLLKGA-EAWKNDAEKTQKAVEEREE 124
Query: 207 YSTG-VQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMN 329
++ ++++ + +KV K DKL+ + D N
Sbjct: 125 LKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIEN 166
>AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform c protein.
Length = 621
Score = 27.9 bits (59), Expect = 6.9
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +3
Query: 39 FRSAFGGLLRRSTTYRTSV--TCRLSTVALQQKFSTIKAAVKIYKSQA--LQNGVPQSHR 206
F+S F GLL RST ++ C+ S V+L S +K A + +K+ A Q V +
Sbjct: 67 FQSEFDGLLARSTAAENALIDICK-SIVSLPDPKSLLKGA-EAWKNDAEKTQKAVEEREE 124
Query: 207 YSTG-VQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMN 329
++ ++++ + +KV K DKL+ + D N
Sbjct: 125 LKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIEN 166
>Z92831-1|CAB07367.1| 332|Caenorhabditis elegans Hypothetical
protein F22G12.3 protein.
Length = 332
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 564 KKMQFCVWFVIVSKIQLVQNYEVYIF-FIIHKYLP 463
K++ C F IQLV+NY+V+I F I +Y P
Sbjct: 59 KEIDICPGFDSNPIIQLVRNYDVWIISFGIKRYYP 93
>U80028-1|AAN73865.1| 369|Caenorhabditis elegans Serpentine
receptor, class w protein138 protein.
Length = 369
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 576 GLKVLFSD*TTFVFNFTQTLSSXTSXHCV 662
G+K + S F FNF+ LS+ T+ HC+
Sbjct: 300 GMKTIMS---YFFFNFSMLLSANTATHCI 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,810,499
Number of Sequences: 27780
Number of extensions: 287511
Number of successful extensions: 754
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -