Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d23
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.6  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   4.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.1  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -2

Query: 428 DQSLCITIRYLKSKFIFHCHYDLNMVQ*VKTQIIHEVAIYSQLTST 291
           DQ  CI+I  +K  +I      +N      T    EVA+  Q   T
Sbjct: 174 DQGACISILAIKVYYISCPEISVNFAHFPATPTGREVALIEQTIGT 219


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 63  LRRSTTYRTSVTCRLSTVAL 122
           LR S    TS  C+L+ VAL
Sbjct: 262 LRSSENQNTSAECKLAKVAL 281


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 63  LRRSTTYRTSVTCRLSTVAL 122
           LR S    TS  C+L+ VAL
Sbjct: 12  LRSSENQNTSAECKLAKVAL 31


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 15/68 (22%), Positives = 28/68 (41%)
 Frame = -2

Query: 296 STEFVVSLAHFQDSLLDFLNRKLRLHACRVPM*LWYPILKGLTFVYFDSGFNCAELLLQR 117
           STE+        D LL    +K R H   +       +LK    ++  +  +  E + + 
Sbjct: 112 STEYRFFKPWLGDGLLISTGQKWRNHRKLIAPTFHLNVLKSFIDLFNANARSVVEKMRKE 171

Query: 116 NGRKTTCY 93
           NG++  C+
Sbjct: 172 NGKEFDCH 179


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 419 ETGQTKRHCPIHC 457
           E  + K +CP+HC
Sbjct: 339 EPPRRKNNCPLHC 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,226
Number of Sequences: 438
Number of extensions: 3237
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)