Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d20
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...   121   7e-29
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    60   2e-10
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.6  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    26   3.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   5.0  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   5.0  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   6.6  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   8.7  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   8.7  

>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score =  121 bits (292), Expect = 7e-29
 Identities = 67/159 (42%), Positives = 99/159 (62%), Gaps = 15/159 (9%)
 Frame = +3

Query: 177 ADILKLREEVREMFQHAYDSYLRYAYPYDELRPLSCDGV-------------DTWGSYSL 317
           A +++LRE  R +F H Y++Y+++A+P DEL PLSC+G+             D  G Y L
Sbjct: 30  ARMVELRETSRRLFYHGYNNYMQFAFPNDELAPLSCEGLGPDYENPNNIGVNDVRGDYLL 89

Query: 318 TLIDALDTLAIMGNYSEFNRVVDIVLQKRHFDADINVSVFETNIRIVGGLLSAHLLS--H 491
           TL+D LDTL ++G+   F   VD V+   +F+ D  V VFE  IRI+GGLLS+H+ +   
Sbjct: 90  TLVDVLDTLVVLGDREGFQDAVDKVIHHINFERDTKVQVFEATIRILGGLLSSHIFASEE 149

Query: 492 KTGMKLEPGWPCNGPLLRLAEDVAQRLIAAFDTTTGMPY 608
           K G ++ P +   G LL LA ++A+RL+ AF T TG+P+
Sbjct: 150 KYGFQI-PLY--KGELLTLATELAERLLPAFRTPTGIPF 185


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
 Frame = +3

Query: 204 VREMFQHAYDSYLRYAYPYDELRPLSCDGVDTWGS-YSLTLIDALDTLAIMGNYSEFNRV 380
           +++ F  ++  Y  Y +  DE  P+   G +         +ID+LDT+ IMG   +  R 
Sbjct: 50  IKKTFIESWTDYETYGWGKDEYYPIIKRGRNYLRKGMGWMIIDSLDTMMIMGLDEQVLRA 109

Query: 381 VDIVLQKRHFDADIN-VSVFETNIRIVGGLLSAHLLSHKTGMKLEPGWPCNGPLLRLAED 557
            + V     ++ D   VSVFET IRI+GGLLS++ LS     KL          L  A D
Sbjct: 110 REWVNNSLTWNQDDEEVSVFETTIRILGGLLSSYHLSQD---KL---------YLDRAVD 157

Query: 558 VAQRLIAAFDTTTGMP 605
           +A RL+AA++T+TG+P
Sbjct: 158 LADRLLAAYNTSTGLP 173


>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 298 PGAVTHSPSLMHWTRLP 348
           PGA  ++P+++HWT +P
Sbjct: 140 PGAYQNTPTIVHWTVIP 156


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 369 FNRVVDIVLQKRHFDA--DINVSVFETNIRIVGGLLSAHLLSHKTGM 503
           +N  +D++L +   D   + ++ V ET+ +I+ GL+    +  +TG+
Sbjct: 78  YNEALDLILDRTAPDTLENFDMDVIETSAQILYGLIHQRYIITRTGL 124


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +3

Query: 180  DILKLREEVREMFQHAYDSYLRYAYPYDELRPLSCDGVDTWGSYSLTLIDALDTLAIMGN 359
            D LK  + + E     Y S  R    +D + PLS D   T       ++ A+   AI GN
Sbjct: 1884 DSLKANDAIDECSNEVYASAWRMQ-KWD-IPPLSLDNKTTKDCLVFEVLHAVHNYAIYGN 1941

Query: 360  YSEFNRVVD 386
            Y      ++
Sbjct: 1942 YLHLEEYIN 1950


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 204 VREMFQHAYDSYLRYAYPYDELRPLSCDGVDTWGSYSLT 320
           VR+ FQ + DSYL+    +D+L  L   G+ T  S + T
Sbjct: 295 VRKNFQQSSDSYLKSNKSFDQLNNLV--GLSTGNSENFT 331


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
 Frame = +3

Query: 147 LILSVRVYKRADILKLREEVREMFQHAYDSYLRYAYP--YDEL-RPLS-CDGVDTWG-SY 311
           L++   V  R  + K+  +V +  +  YD  L + YP  +DEL R LS    +D    S 
Sbjct: 142 LLVKFSVDLRPKVRKISIQVLQTLKQKYDGLLPHLYPAIFDELQRSLSEVSNMDNPSFSK 201

Query: 312 SLTLIDALDTLAIMGNYSEFNRVVDIVLQKRHFDADINVS--VFETNIRIVGGLLSAHL 482
            L  +  L+ L  +   S  +  +      R   ++I  S  +FE +I+++  +LS  +
Sbjct: 202 GLHTLHLLECLVDINQASGSDLGIICNALSRILTSNIPTSEPIFEMSIKLILKVLSERI 260


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 120 ISISVLTCNLILSVRVYKRADILKLREEVREM 215
           ISI++L C+L    R+Y  +D  K + ++ E+
Sbjct: 118 ISIAMLCCSLGYDSRIYMPSDQSKEKSDILEL 149


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 416 CIKVSFL*YYIYYSIKFTIVSHNGKRVQCI 327
           CI VS    Y YYSI  +I+   GK V+ +
Sbjct: 618 CIVVSNTDGYEYYSIPTSILDKTGKTVRSL 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,351
Number of Sequences: 5004
Number of extensions: 44807
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)