Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25d20
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0881 + 32692345-32692497,32693167-32693286,32693382-326934... 130 1e-30
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237... 118 5e-27
05_02_0107 - 6667944-6668214,6668376-6668524,6668654-6668851,666... 89 3e-18
04_04_1078 - 30655212-30655289,30655614-30655811,30655916-306560... 76 3e-14
08_01_0458 + 4046809-4047099,4047269-4047321,4047332-4047722,404... 28 5.1
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187... 28 5.1
05_03_0279 - 11547086-11547246,11547591-11547807,11549132-11549275 28 6.8
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 28 6.8
>01_06_0881 +
32692345-32692497,32693167-32693286,32693382-32693474,
32694197-32694283,32696052-32696063,32696553-32696625,
32697073-32697182,32697608-32697658,32698154-32698242,
32698518-32698599,32698680-32698793,32699015-32699094,
32699749-32699884,32700210-32700280,32700363-32700457,
32700467-32700597,32701009-32701398
Length = 628
Score = 130 bits (313), Expect = 1e-30
Identities = 66/129 (51%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Frame = +3
Query: 189 KLREEVREMFQHAYDSYLRYAYPYDELRPLSCDGVDTWGSYSLTLIDALDTLAIMGNYSE 368
+LR+EV++MF HA+D Y+++A+P DELRPLSC G D+ G Y+LTLID+LDTLA++G+
Sbjct: 47 RLRDEVKDMFYHAFDGYMQHAFPLDELRPLSCQGEDSLGGYALTLIDSLDTLALLGDKER 106
Query: 369 FNRVVDIVLQKRHFDADINVSVFETNIRIVGGLLSAHLL-SHKTGMKLEPGWPCNGPLLR 545
F+ V+ V + FD + VSVFETNIRI+GGLLSAHL+ S L+ G L
Sbjct: 107 FDAAVEWVGKNVRFDINKTVSVFETNIRILGGLLSAHLIASDYATFSLQITSTAGGGTLT 166
Query: 546 LAEDVAQRL 572
L V RL
Sbjct: 167 LEFGVLSRL 175
>02_05_0701 +
31022485-31022648,31023569-31023611,31023712-31023777,
31024007-31024062,31024091-31024190,31024290-31024472,
31024953-31025001,31025089-31025169,31025209-31025268,
31025394-31025514,31025612-31025693,31025783-31025868,
31026011-31026111,31026246-31026387,31026488-31026638,
31026710-31026937
Length = 570
Score = 118 bits (283), Expect = 5e-27
Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 13/160 (8%)
Frame = +3
Query: 168 YKRADILKLREEVREMFQHAYDSYLRYAYPYDELRPLS---CDGVDTWG----------S 308
Y R L +R +V EMF HAYD+Y+ YA+P+DEL+PL+ D + G S
Sbjct: 40 YGRGRRLYMRNKVLEMFYHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLNNVNDDIVS 99
Query: 309 YSLTLIDALDTLAIMGNYSEFNRVVDIVLQKRHFDADINVSVFETNIRIVGGLLSAHLLS 488
T+I +D+L ++GN +EF R V + + FD D +++FE NIR++GGL+S H+L+
Sbjct: 100 SENTIIRKVDSLVVLGNLTEFERGVLWLSENLTFDVDARINLFECNIRLLGGLISGHILA 159
Query: 489 HKTGMKLEPGWPCNGPLLRLAEDVAQRLIAAFDTTTGMPY 608
+ L+ G P LL LAE++ R + AF+T TG+PY
Sbjct: 160 KEHSSHLKDG-PYQDQLLHLAENLGSRFLPAFETPTGLPY 198
>05_02_0107 -
6667944-6668214,6668376-6668524,6668654-6668851,
6668989-6669250,6669378-6670327,6670907-6671022,
6671121-6671280
Length = 701
Score = 89.0 bits (211), Expect = 3e-18
Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 10/147 (6%)
Frame = +3
Query: 195 REEVREMFQHAYDSYLRYAYPYDELRPLSCDGVDTWGSYSLTLIDALDTLAIMGN---YS 365
+++V+E F+HA+ Y YA YDEL PL+ G+D G T++D+LDT IMG S
Sbjct: 195 QKKVKEAFEHAWSGYRNYAMGYDELMPLTRRGIDGLGGLGATVVDSLDTAIIMGADDVVS 254
Query: 366 EFNRVVDIVLQKRHFDADINVSVFETNIRIVGGLLSAHLLSHKTGMKLEPGWPCNGP--- 536
E ++ ++ L K+ + V++FET IR++GGLLSA+ LS + + G P
Sbjct: 255 EASKWIEDNLMKKLSEKG-QVNLFETTIRVLGGLLSAYHLSGGDKARGDSGIPMTSKRAN 313
Query: 537 ---LLRLAEDVAQRLIAAFDTT-TGMP 605
LL +++D+A RL+ AF ++ T +P
Sbjct: 314 PERLLEVSKDLADRLLLAFTSSPTAIP 340
>04_04_1078 -
30655212-30655289,30655614-30655811,30655916-30656086,
30656172-30656252,30656464-30656565,30656671-30656779,
30656900-30656965,30657566-30657630,30658386-30658475,
30658952-30659123,30659831-30659943,30660046-30660219,
30660300-30660347,30662041-30662205
Length = 543
Score = 75.8 bits (178), Expect = 3e-14
Identities = 53/138 (38%), Positives = 77/138 (55%)
Frame = +3
Query: 195 REEVREMFQHAYDSYLRYAYPYDELRPLSCDGVDTWGSYSLTLIDALDTLAIMGNYSEFN 374
RE+V+E HA++SY++YA+ DEL+P S +GV+++G TL+D+LDTL IMG EF
Sbjct: 104 REKVKEAMAHAWNSYVKYAWGMDELQPQSKNGVNSFGGLGATLVDSLDTLYIMGLKDEFQ 163
Query: 375 RVVDIVLQKRHFDADINVSVFETNIRIVGGLLSAHLLSHKTGMKLEPGWPCNGPLLRLAE 554
R + +VGGLLSA+ LS G K+ L A+
Sbjct: 164 RARE----------------------VVGGLLSAYDLS---GDKV---------FLEKAK 189
Query: 555 DVAQRLIAAFDTTTGMPY 608
D+ RL+ A+DT +G+PY
Sbjct: 190 DITDRLLPAWDTPSGIPY 207
>08_01_0458 +
4046809-4047099,4047269-4047321,4047332-4047722,
4047998-4048291
Length = 342
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 288 GVDTWGSYSLTLIDALDTLAIMGNYSEFNRVVDIVLQKRHFDADINVS 431
G+D WG+ SL A A M S+F + +I + +RH +A +NVS
Sbjct: 138 GIDVWGAMSLDRALAAGFSASMAADSKF--LAEIAI-RRHVEAFMNVS 182
>07_03_0923 -
22617627-22617860,22618486-22618542,22618612-22618768,
22618875-22619014,22619642-22619777,22619874-22620142,
22620272-22620492,22620648-22620707,22620859-22620915,
22621008-22621405,22621929-22622000,22622098-22622169,
22622246-22622317,22622574-22622645,22622738-22622867,
22623065-22623170
Length = 750
Score = 28.3 bits (60), Expect = 5.1
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Frame = +3
Query: 255 PYDELRPLSCDGVDTWGSYSLTLIDALDTL---AIMGNYSE--FNRVVDIVLQKRHFDAD 419
PYD RP + + W + L IDA+ + +I G SE +R VDI+ + +
Sbjct: 599 PYDSSRPRAEQHLVRWATSQLYDIDAISKMVDPSIRGQCSEKALSRFVDIISSCIQHEPE 658
Query: 420 INVSVFE-----TNIRIVGGLLSAHLL-SHKTG 500
S+ E T + G L AHL+ S TG
Sbjct: 659 FRPSMSEVVQDLTRMHEKGLLCIAHLICSVSTG 691
>05_03_0279 - 11547086-11547246,11547591-11547807,11549132-11549275
Length = 173
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 562 ATSSAKRSKGPLHGQPGSNFIPVLCDSK 479
AT S P+HGQP S + LC +K
Sbjct: 8 ATPCPTESSAPVHGQPESQLLYYLCFNK 35
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +3
Query: 393 LQKRHFDADINVSVFETNIRIVGG 464
++K+ DA++ +VF+T+I +VGG
Sbjct: 480 IEKQKKDAELAAAVFDTDIELVGG 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,802,432
Number of Sequences: 37544
Number of extensions: 252762
Number of successful extensions: 552
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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