Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25d18
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0799 + 27809301-27811550 35 0.052
08_02_0168 - 13640894-13641973 34 0.12
12_02_0528 + 20059613-20061472 33 0.21
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 32 0.48
05_01_0212 + 1601861-1603600 31 0.64
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 31 0.84
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 31 1.1
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 31 1.1
02_01_0088 - 627825-628984,629339-629509,629612-630416 31 1.1
04_02_0011 - 8513471-8513673,8513815-8513869 29 3.4
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263 29 3.4
02_05_0669 - 30755406-30756081,30756869-30756933,30757040-307572... 29 4.5
01_06_1682 - 39130696-39131705,39132355-39132583 29 4.5
10_08_0406 - 17688069-17690643,17691065-17691132 28 7.8
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 28 7.8
09_02_0288 + 6936867-6936879,6936965-6937038,6937445-6937588,693... 28 7.8
07_01_0546 - 4024282-4024291,4024486-4024550,4024739-4024904,402... 28 7.8
05_03_0170 - 9132207-9133010,9133232-9133894 28 7.8
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688 28 7.8
>03_05_0799 + 27809301-27811550
Length = 749
Score = 35.1 bits (77), Expect = 0.052
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 230 PNQFHDRCVPCPGL--GEKCFGPCCNRYGNGTLQCWQGKCQQCYDSYGNFVCRDG 388
P ++H CVPCP G G C Y +G +CW Q Y +C+DG
Sbjct: 302 PRKYHYSCVPCPDFRKGVCRRGDMC-EYAHGVFECWLHPAQ-----YRTRLCKDG 350
>08_02_0168 - 13640894-13641973
Length = 359
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 248 RCVPCPGLGEKCFGPCCNRYGNGTLQCWQGKCQQCYDSYGNFVCR 382
R P PG+G CF C T W GKC C + + VCR
Sbjct: 279 RAFPKPGMGMVCFR--CGDAHRRTECRWAGKCSICSQDHKDVVCR 321
>12_02_0528 + 20059613-20061472
Length = 619
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 230 PNQFHDRCVPCPGL--GEKC-FGPCCNRYGNGTLQCWQGKCQQCYDSYGNFVCRDGI 391
P ++H CVPCP G C G C Y +G + W Q Y +C+DG+
Sbjct: 209 PRKYHYSCVPCPEFKKGAGCRRGDMC-EYAHGVFESWLHPAQ-----YRTRLCKDGV 259
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 31.9 bits (69), Expect = 0.48
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
Frame = +2
Query: 203 KCYCADGFVPNQFHDR-CVPCPGLGEK----CFGPCCNRYGNGTLQCWQGKCQQCYDSYG 367
+C C++G+ N + D C +K C+G C N G T C +G ++
Sbjct: 286 RCRCSNGYQGNPYLDSGCTDIDECQDKEKYGCYGDCTNTIGGYTCLCPRGTIGNVHEKN- 344
Query: 368 NFVCRDGIDQILLISTTQIVMGSALILGIIATFILLYKLCAATTIGPFGGEFEQN 532
VCR D+ +G + + + F L +L I FEQN
Sbjct: 345 --VCRPK-DKFTFALKAVTGVGLGVFMSVFMAFWLRLRLQKRKLIRTRQKFFEQN 396
>05_01_0212 + 1601861-1603600
Length = 579
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Frame = +2
Query: 230 PNQFHDRCVPCPGL--GEKC-FGPCCNRYGNGTLQCW----QGKCQQCYDSYG 367
P ++ CVPCP G C G C Y +G +CW Q + + C D G
Sbjct: 226 PRRYSYSCVPCPEFRKGGSCRKGDAC-EYAHGVFECWLHPAQYRTRLCKDEVG 277
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 31.1 bits (67), Expect = 0.84
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Frame = +2
Query: 122 SRAPSL-SVTMKCFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGE------- 277
S AP S C N +Y+ + CYC+DG+ N + D C + E
Sbjct: 178 SSAPECCSANSFCKGYNGTTADYDGYR--CYCSDGYEGNPYVDG--GCRDIDECKSPHIY 233
Query: 278 KCFGPCCNRYGNGTLQCWQG 337
C+G C N G QC G
Sbjct: 234 PCYGDCKNTRGGYDCQCHHG 253
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = +2
Query: 119 CSRAPSLSVTMKCFAINCIGVEYECIKGKCYCADGFVPNQF-HDRCVP---C-PGLGEKC 283
C +A S + + C + N I + +C C+ G+ N + D C C + C
Sbjct: 42 CEKAKSKTTSYACVSTNSICNDDPSGGYRCNCSHGYEGNPYIKDGCEDINECLDNVTYPC 101
Query: 284 FGPCCNRYGNGTLQCWQG 337
G C N G+ T C QG
Sbjct: 102 PGICNNTMGSFTCSCHQG 119
>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = -3
Query: 266 LDMAHNDHGTGLVRIHRRSNISLLYIHIRLLCNL*RNTS*SLTDSAHANTKKQANVIHFC 87
LD ++H T VRI N+S + NL +N S + +++ +A +I
Sbjct: 1762 LDSKTHEHSTSFVRIDEGKNLSTAILSASSFVNLVKNLS-APSETVNARRAAAEAIIASG 1820
Query: 86 ILRFQNLFSNSVT 48
+L NLF+ S++
Sbjct: 1821 LLEEANLFAPSLS 1833
>02_01_0088 - 627825-628984,629339-629509,629612-630416
Length = 711
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Frame = +2
Query: 119 CSRAPSLSVTMKCFAINCIGVEYECIKGK-CYCADGFVPNQFHDR-CVP---CPGLGEKC 283
C++AP + C + N + G C C +GF N + + C C G+ C
Sbjct: 221 CAQAPKNRTSYACVSTNSSCINSPNATGYLCACNNGFAGNPYLEGGCQDINECESPGQYC 280
Query: 284 FGPCCNRYGNGTLQCWQG 337
G C N G C G
Sbjct: 281 HGICDNTIGGYHCYCGPG 298
>04_02_0011 - 8513471-8513673,8513815-8513869
Length = 85
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +2
Query: 92 SGSRSLVFLCSRAPSLSVTMKCFAINCIGV---EYECIKGKCYCADGFVPNQFHDRCVPC 262
SG S C AP V C C + +Y+ KG+C+ DG F P
Sbjct: 21 SGKVSATEECHAAPITEVPKPCVDATCKAICSDKYQS-KGECFSTDGLYYCNFCANSPPL 79
Query: 263 PGLG 274
P +G
Sbjct: 80 PQIG 83
>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
Length = 769
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Frame = +2
Query: 203 KCYCADGFVPNQFHDR-CVP---CPGLGE-KCFGPCCNRYGNGTLQCWQGKCQQCYDSYG 367
+C C+ G+ N + D C C E CFG C N G+ T +C G + G
Sbjct: 301 RCRCSKGYEGNPYLDGGCKDIDECQRTKEYPCFGKCTNTIGSYTCECRPG-------TSG 353
Query: 368 NFVCRDGIDQILLISTTQIVMGSALILGI-IATFILLYKL 484
N +G + T + + ++ G+ + F+LL+ L
Sbjct: 354 NATQENG-----CLPTDKFTLALKVVTGVSVGVFLLLFML 388
>02_05_0669 -
30755406-30756081,30756869-30756933,30757040-30757209,
30757313-30757496,30758536-30758619,30758740-30758938,
30760200-30760441,30761811-30762053
Length = 620
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 239 FHDRCVPCPGLGEKCFGPCCNRYGN 313
F CV P LGE GPC +R G+
Sbjct: 331 FQHHCVWAPVLGELPLGPCSHRQGS 355
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -2
Query: 336 PCQH*SVPFPYLLQQGPKHFSPRPGHGTQRSWNWFGTNPSAQ*HFPFIHSYSTPMQFIA 160
P Q+ S PF Y P FSP P + + + + P + H P + Y+ P + A
Sbjct: 193 PYQYPSPPFNYKSPPLPNQFSPPPFNKFPPPSHQYPSPPQSSYHSPPPYQYTPPNSYQA 251
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = -2
Query: 660 EFRYAIAGYTAISVVGVLEYLGGASRNLSSTYTWRLPIDRRWLFCSNSPPKGPMVVAAH 484
EFRY + G T I + VL L A LS ++RR CS + P+VVAA+
Sbjct: 197 EFRYYLLGLTLIYIFTVLWSLCLAKLVLSL-------LNRRLASCSLHTARNPLVVAAY 248
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Frame = +2
Query: 155 CFAINCIGVEYECIKGKCYCADGFVPNQF-----HDRCVPCPGLGEKCFGPCCNRYGNGT 319
C + N Y+ + KC+C+DG+ N + HD C+G C N G+
Sbjct: 279 CLSANSFCHAYD-LGYKCHCSDGYQGNPYIRGGCHDIDECKSPQDYSCYGNCNNTPGSHI 337
Query: 320 LQCWQG 337
C +G
Sbjct: 338 CDCPRG 343
>09_02_0288 +
6936867-6936879,6936965-6937038,6937445-6937588,
6937754-6937958,6938552-6938852,6938952-6939150,
6939393-6939477,6939554-6939595,6939676-6939724,
6939872-6939941,6940296-6940301
Length = 395
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 56 CSKISFEIVKCKSGSRSLVFLCSRAPSLS 142
C + IV+C GS++ + LCS P L+
Sbjct: 35 CDSATRTIVQCNVGSKTPIILCSLNPKLA 63
>07_01_0546 -
4024282-4024291,4024486-4024550,4024739-4024904,
4025012-4025160,4025332-4025440,4025532-4025725,
4025839-4025974,4026123-4026623,4026709-4026813,
4027023-4027113,4027325-4027411,4028038-4028128,
4028307-4028336
Length = 577
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 198 KGNVTAPMDSYQTSSMIVVCHVQA*EKNASAL 293
KG+++ M +QTS + CH+ + EK L
Sbjct: 347 KGSISISMSLHQTSFCFICCHLTSGEKEGDEL 378
>05_03_0170 - 9132207-9133010,9133232-9133894
Length = 488
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 318 VPFPYLLQQGPKHFSPRPGHGTQRSW 241
VP P L +Q P+ R G GT +SW
Sbjct: 20 VPVPELHRQAPRRRGRRGGGGTVKSW 45
>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
Length = 761
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Frame = +2
Query: 119 CSRAPSLSVTMKCFAINCIGVEYECIKG-KCYCADGFVPNQFHDRCVPCPGLGE------ 277
CS A C ++N ++ G +C C+ G+ N + D C + E
Sbjct: 265 CSAATRNMTDYACRSVNSHCIDSIDGPGYRCNCSQGYEGNPYLDG--GCQDINECERPDK 322
Query: 278 -KCFGPCCNRYGNGTLQCWQG 337
CFG C N G+ + C +G
Sbjct: 323 YACFGECTNTLGSYSCMCPRG 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,123,571
Number of Sequences: 37544
Number of extensions: 461239
Number of successful extensions: 1120
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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