Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d15
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 465 VDLRRNDQSLNLEKYT 512
           +D R ND S+N EK T
Sbjct: 429 IDYRNNDLSINEEKRT 444


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 299 RSRPQQGQNSCHDS-HRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQ 150
           +S+P   Q   H S H   +    P +    +QQ+PQ  +++++ +  +Q+
Sbjct: 806 QSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQR 856


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/39 (23%), Positives = 15/39 (38%)
 Frame = +3

Query: 357 MLLISVMTGSYCCLWFXXXXXXXXXXXXXYVYKLETVDL 473
           MLLI  + G+ C +W              ++  L   D+
Sbjct: 66  MLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDI 104


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/39 (23%), Positives = 15/39 (38%)
 Frame = +3

Query: 357 MLLISVMTGSYCCLWFXXXXXXXXXXXXXYVYKLETVDL 473
           MLLI  + G+ C +W              ++  L   D+
Sbjct: 66  MLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDI 104


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 244 VTPSCRPNTFICGNSGPRAAKK 179
           VTPSCR   +    + P  A+K
Sbjct: 97  VTPSCRRQRYNIAAANPLLAEK 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,115
Number of Sequences: 438
Number of extensions: 4189
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)