Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d09
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   142   1e-34
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    29   2.6  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    29   2.6  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    29   2.6  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    29   2.6  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    29   3.4  
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    29   3.4  
Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    27   7.9  
AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  142 bits (345), Expect = 1e-34
 Identities = 77/158 (48%), Positives = 96/158 (60%)
 Frame = +3

Query: 102 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 281
           M +PK +   IYEYLF EGV VAKKD++A  H  +E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 282 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 461
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119

Query: 462 AYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 575
           AYR           +K  + GPG A + ++ G+GRG P
Sbjct: 120 AYRT----------EKVTEAGPGGAPV-YRAGFGRGAP 146


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +3

Query: 411 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 500
           G V RP APAR A   +  R  PAAP   P
Sbjct: 33  GRVSRPAAPARGAPPAARGRPAPAAPANVP 62


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = +3

Query: 411 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 569
           GP G P AP    E  S   R+ ++PG  P       GP   D    GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = +3

Query: 411 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 569
           GP G P AP    E  S   R+ ++PG  P       GP   D    GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196


>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 411 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 578
           GP G P +PA  +    A    PA P        A  GPG      +GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 411 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 578
           GP G P +PA  +    A    PA P        A  GPG      +GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 411 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 578
           GP G P +PA  +    A    PA P        A  GPG      +GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 411 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 578
           GP G P +PA  +    A    PA P        A  GPG      +GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 423 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 545
           + D+ + S++D +  ++TPA     P  KKA+    S+D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 423 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 551
           + D+ + S++D +  ++TPA     P  KKA+    S+D E K
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
            isoform a protein.
          Length = 1702

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 546  IQDQLSLDQHQPFYHEVQHQGQQE 475
            +Q+Q +  Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206


>Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.2 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 405 RRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGG-YGRGRPAS 581
           R GP GRP  P R   +    +  PA  G A H  + D  PG      K G  GRG P +
Sbjct: 165 RPGPDGRPGQPGRKGNNGRPGQ--PAPQGNAGHPGR-DGEPGQPGNPGKDGRKGRGHPGT 221


>Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical
           protein T23F6.4 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 411 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 539
           G   +P A ++ A+D SAY+RT        H +K +  PG +D
Sbjct: 82  GDANKPRAWSKYAKDSSAYKRT--------HGEKEEANPGKSD 116


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.6 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 408 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 575
           +GP G P APA+           PA    +P    A   PGS      G  GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.5 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 408 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 575
           +GP G P APA+           PA    +P    A   PGS      G  GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206


>Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical
           protein C29F4.1 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 411 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 533
           GP G+P AP +   D       P  P   P    AD  PG+
Sbjct: 225 GPQGQPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +3

Query: 408 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 578
           +GP G+P  P +      A  R PA    AP    A   PG A    +  +G   P+
Sbjct: 152 QGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGPS 208


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
            protein Y39A1B.3 protein.
          Length = 1499

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +3

Query: 366  PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 509
            P T+  S RT +       R   PA+S ED S     PAAP  A   K
Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1479


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
            compensation protein protein.
          Length = 1455

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +3

Query: 366  PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 509
            P T+  S RT +       R   PA+S ED S     PAAP  A   K
Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1435


>AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.8 protein.
          Length = 789

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 399 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 485
           T+   PVGR ++ ARS ++ SA R+ P +
Sbjct: 8   TIENTPVGRGNSGARSHKEPSAKRKKPTS 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,258,351
Number of Sequences: 27780
Number of extensions: 274593
Number of successful extensions: 968
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)