Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d05
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    27   1.1  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    27   1.4  
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    27   1.9  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    25   5.8  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       25   7.6  

>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 316 VLALFVFTLLISNNSERFTAPDKTRLTRLI 227
           +LALFV +LLIS   ER T    T  +  I
Sbjct: 319 ILALFVVSLLISGRDERLTTLSATAASPFI 348


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 486

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 56 MTRSKMRCGLSTRSIHPH 3
          + +S +RCG +T S HPH
Sbjct: 34 LNKSALRCGQATDSTHPH 51


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 339 VENMNPNIVKLEYAVRGPLVIRAGEIEKELEKGAQKPFKRV 461
           V++M  +I +  Y VRG  V+  GE++ + E  A K  +R+
Sbjct: 58  VDDMYGDIDRGVYIVRGENVVLLGELDLDKEYDAVKQLRRM 98


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 60  QSSMFACT*KIRL-FRVTRGIF-FYKLSVIYHLHTAYNSSPTYYK*FD*LRNMSQLK 224
           +SS   CT + ++   +T  +F FY+L   Y  H  Y  S   ++     R ++QLK
Sbjct: 105 KSSGDVCTLRFQIPEEMTSPVFAFYRLKNFYQNHRRYTVSADMFQLLGEARTVAQLK 161


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 168 YCRQCAGGKSLIIYKKK 118
           Y +QCA GK+L+ + KK
Sbjct: 6   YVKQCAYGKTLVRFMKK 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,337
Number of Sequences: 5004
Number of extensions: 34296
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)