Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d05
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000195-6|AAO61435.1|  350|Caenorhabditis elegans Hypothetical ...    73   1e-13
AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical ...    73   1e-13
AC024799-8|AAW88387.1|  297|Caenorhabditis elegans Hypothetical ...    29   2.2  

>AF000195-6|AAO61435.1|  350|Caenorhabditis elegans Hypothetical
           protein C32F10.8b protein.
          Length = 350

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 35/54 (64%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
 Frame = +3

Query: 306 NARTMAS-KGLTVENMNPNIVKLEYAVRGPLVIRAGEIEKELEKGAQKPFKRVI 464
           + R MAS K L   N+NPN++K+EYAVRGP+VIRA E+EKEL  GAQKPF  VI
Sbjct: 19  STRIMASGKTLNTSNINPNVIKMEYAVRGPIVIRAVELEKELATGAQKPFPNVI 72


>AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical
           protein C32F10.8a protein.
          Length = 504

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 35/54 (64%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
 Frame = +3

Query: 306 NARTMAS-KGLTVENMNPNIVKLEYAVRGPLVIRAGEIEKELEKGAQKPFKRVI 464
           + R MAS K L   N+NPN++K+EYAVRGP+VIRA E+EKEL  GAQKPF  VI
Sbjct: 19  STRIMASGKTLNTSNINPNVIKMEYAVRGPIVIRAVELEKELATGAQKPFPNVI 72


>AC024799-8|AAW88387.1|  297|Caenorhabditis elegans Hypothetical
           protein Y49C4A.2 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 443 LCALLKFFFNLASANDKGPAHSVFQLDNVGIHVFHSQAFGCHRSCVV 303
           +C +  F    A   +  P   +F  DNVG + F+ + FGC    ++
Sbjct: 218 VCTVFIFDIIPAVCGNLWPIAYIFSFDNVGPYNFYLKIFGCSIETII 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,278,516
Number of Sequences: 27780
Number of extensions: 197812
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)