Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d05
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    27   0.10 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.6  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   8.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 225 TLTVTCSVINRTTYNTSDYYCRQCAGGKSLIIYKK 121
           TL     V+  T YN  DY  RQ A G +  I  +
Sbjct: 228 TLIKISDVLEETFYNNGDYIIRQGARGDTFFIISR 262


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 234 RVSRVLSGAVKRSELFEINKVNTNNARTMASKGLTVEN 347
           R S ++ G  KRS++F     N  N+  + +    +EN
Sbjct: 349 RDSSIICGGNKRSQVFRGRDANRQNSCNIYNASSRMEN 386


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 36  PHFTPRHLQSSMFACT*KIRLFRVTRGIFFYKLSVIY 146
           P  TP+ L  S    +  +R   ++  +F+Y+L+ +Y
Sbjct: 255 PKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLY 291


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 246 RD*RGLSTLTVTCSV 202
           +D  GLST T TCS+
Sbjct: 507 KDSLGLSTATSTCSL 521


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 94  DYFESHVVFFFINYQ*FTTCTL 159
           D  E ++  +  NY  F TC L
Sbjct: 62  DISEGNIKKYLTNYSCFITCAL 83


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 404 ANDKGPAHSVFQLDNVGIHVFHSQAF 327
           A+DKG A  V+Q  +   H   S  F
Sbjct: 207 ADDKGDALIVYQNSDESFHRLTSNTF 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,720
Number of Sequences: 438
Number of extensions: 2465
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)