Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d03
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    69   5e-13
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    28   1.5  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   2.0  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   3.5  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    27   3.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.2  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
 Frame = +3

Query: 219 FSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVY 398
           F   N +  +A+LA YP   +  A++PLLDLAQRQ G W+P +AM+++A +  +    V+
Sbjct: 7   FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVH 66

Query: 399 EVATFY-TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGK--FS 569
            +   Y   F  RP  K  V++C +  C     +      +  +N +    S   K  F 
Sbjct: 67  SLILAYPNDFFWRP-KKPRVRICNSWMCQQAAEE------QGNSNWDSQCRSVATKYGFD 119

Query: 570 VSEVECLGACVNAPMIQVNDDYYEDLSVE---DTKEIISQXK 686
           V    CLG C   P + +ND  Y   + E   D  E ++Q K
Sbjct: 120 VENTGCLGNCFQGPAMWINDKIYGVNTKEKLVDIMEALTQKK 161


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 508 MQLNRKQTVKLEATVLVASFLFQRLN 585
           MQ++  +TV+L  T+  A+ L QRLN
Sbjct: 201 MQIHANKTVQLSQTIQKATLLLQRLN 226


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 129 RSIQTTASRQHDS-LFVHRDTPEDNPSIPFEFSQANQKRV-EALLAIYPEGHKRGAMIPL 302
           R +   A++QH + + +H   P    + P +     + RV EA+L  YP+G    A + L
Sbjct: 203 RELTVRAAKQHGARVLIH---PVVGMTKPGDIDHFTRVRVYEAILQRYPKG---SAKLSL 256

Query: 303 LDLAQRQSG 329
           L LA R +G
Sbjct: 257 LPLAMRMAG 265


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 462 CTTTPCWLRGSDAILNAIKQETNCEVGGN 548
           C T   W+ G  A+  A   + NCE G N
Sbjct: 508 CETGKSWMYGGMALRMAAALQLNCEQGSN 536


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 618 QVNDDYYEDLSVEDTKEIISQXKEGREAXNLGP 716
           ++NDDY +      TK+  SQ K+ +E+  L P
Sbjct: 69  ELNDDYLDAHRKSSTKKKSSQNKQAKESKLLDP 101


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 474 PCWLRGSDAILNAIKQETNC--EVGGNSP 554
           PCWL+      +A+K  + C  E+G +SP
Sbjct: 477 PCWLKIQQPNFDAVKNASWCRVEIGCSSP 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,424
Number of Sequences: 5004
Number of extensions: 64406
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)