Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d03
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical pr...   241   4e-64
Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical ...    29   4.4  
U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...    28   7.7  
AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical
           protein F53F4.10 protein.
          Length = 239

 Score =  241 bits (590), Expect = 4e-64
 Identities = 107/177 (60%), Positives = 140/177 (79%)
 Frame = +3

Query: 168 LFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPIS 347
           L VHRDT E+N ++ F+F+  NQ+R++A++ IYPEGHK GA+IPLLDLAQRQ G WLPIS
Sbjct: 27  LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHG-WLPIS 85

Query: 348 AMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQET 527
           AMH+VA+IL +P+MR YEVATFYTMF R+P+GKY +QVC TTPC LRG++ I   I+++ 
Sbjct: 86  AMHEVAKILEVPRMRAYEVATFYTMFNRQPVGKYFLQVCATTPCMLRGAETITETIEKKL 145

Query: 528 NCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISQXKEGRE 698
               G  +  G F+++EVECLGACVNAPMIQ+NDDY+EDL+ +D  EI+   K GR+
Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGRK 202


>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 267 PEGHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTM 422
           P+  +R A+   L LAQ   G W+  S +       ++P++  Y +AT  TM
Sbjct: 162 PDMKRRMALATTLLLAQGGIGWWMVKSGLDPSKNSSDVPRVSQYRLATHLTM 213


>AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.3 protein.
          Length = 252

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 459 VCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY- 635
           VC ++P  L     +  +I+   + + G N      S  +    GAC+  P I  +  Y 
Sbjct: 84  VCVSSPPPLSHHSYLETSIETSKSEQCGANRKTTSMSFQKSFVTGACLTYPFIGQSLTYR 143

Query: 636 -YEDLSVEDTKEIIS 677
             EDL+ +D  +I++
Sbjct: 144 NQEDLAAQDYSKIMT 158


>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 435 PIGKYHVQVCTTTPCWLRGSDAILNAIKQETNC 533
           P+  YH+ +CTT     +G   +++   +ET C
Sbjct: 184 PLNIYHMPICTTIGLLDKGQIVVIDPTDKETAC 216


>AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical
           protein Y32G9A.5 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 100 EYRACGVYPLGQFRPQHQGNMTVYLST 180
           +Y     YPLG   PQ+ GN   + ST
Sbjct: 227 QYLGSSQYPLGSDAPQYPGNYNAFAST 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,835,177
Number of Sequences: 27780
Number of extensions: 371129
Number of successful extensions: 922
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)