Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d02
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    27   2.1  
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    27   2.8  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   3.6  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    26   4.8  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   6.4  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   6.4  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   8.4  

>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 445 YHFLFLTEINFSGWSTPCSIQTSPKRTIFGLGPL 546
           +H+L   + N S +      Q +P RTI+ L P+
Sbjct: 183 FHYLSPRDRNKSSYGKKAQYQDNPNRTIYSLSPV 216


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 206 FCLFTDSNNKGNKGKI 159
           F +FT SNNKGN+G++
Sbjct: 48  FQVFTTSNNKGNEGQL 63


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 203 KIAPIYHFCKIHIIFLLRIENSSEVLLFFHYW*LLVKYRFN 325
           + +P + F  +   FL+ +E    +L  +HYW L+++   N
Sbjct: 297 RCSPAFFFQLLIQPFLINLEKRIPLLRKYHYWVLIIEMLIN 337


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 732 ETELLTSLVRQYSHILENKKSDMTNNQLKEQTWSKLAKEFNSL 604
           E ++L + V +    L+N  SD+T   + +Q   +LAK+  +L
Sbjct: 450 EIDILQNHVEKLKMSLKNTNSDITGEDVLQQKLKQLAKDRGNL 492


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = -1

Query: 606 LSSFVFRSDKTLRAKYDNIKKRAKTKYSTFRRSLYGTGGGPSAEINFSQEEEVVME 439
           L    F  D   R + D+  K AK+  S   R        P  EINF+ E   VME
Sbjct: 160 LDPHAFLGDSAKRIRVDSDSKDAKSVPSENGRIRVSMS--PQNEINFTPENPAVME 213


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 310 YQKSPIMKEQQNFRTVFYSKQKYD 239
           Y K P M++QQN +  +Y++Q Y+
Sbjct: 659 YYKQP-MQQQQNMQQPYYNQQNYN 681


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 624 PALTKFAPSADYLSYHF 674
           P LTKF  + DY+S H+
Sbjct: 295 PCLTKFPATIDYISLHY 311


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 184 ITKETKEKYAETSQDTALPAK-NNQNILVCINFI*KKICLFPILTRTVLCRIYH 26
           ITK TK+K    S+ +  P K +N +I    +F+  K+  FP    T L    H
Sbjct: 604 ITKHTKKKNKHASETSVAPEKVDNSSIEQSSSFL-TKLYTFPFTIITWLMHPTH 656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,896
Number of Sequences: 5004
Number of extensions: 59501
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)