Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25d02
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0444 + 17816207-17817436                                         35   0.077
06_03_0334 - 19660526-19661755                                         35   0.077
07_03_0999 - 23216665-23217419,23217626-23217956                       33   0.23 
03_01_0333 + 2624073-2625185                                           29   3.8  
01_06_0675 + 31092877-31092916,31093349-31093503,31093570-310936...    29   3.8  
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405...    28   6.6  
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758     28   8.8  

>11_04_0444 + 17816207-17817436
          Length = 409

 Score = 34.7 bits (76), Expect = 0.077
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -1

Query: 708 VRQYSHILENKKSDMTNNQLK-EQTWSKLAKEFNS--LSSFVFRSDKTLRAKYDNIKKRA 538
           +R  S  L N    +  N  K EQ W  +A+EFNS   S+   R+ K  R  +DN+ KR 
Sbjct: 169 IRLMSSWLNNSVDPIKGNDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNV-KRD 227

Query: 537 KTKYSTF 517
            TK+  F
Sbjct: 228 VTKFCGF 234


>06_03_0334 - 19660526-19661755
          Length = 409

 Score = 34.7 bits (76), Expect = 0.077
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -1

Query: 708 VRQYSHILENKKSDMTNNQLK-EQTWSKLAKEFNS--LSSFVFRSDKTLRAKYDNIKKRA 538
           +R  S  L N    +  N  K EQ W  +A+EFNS   S+   R+ K  R  +DN+ KR 
Sbjct: 169 IRLMSSWLNNSVDPIKGNDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNV-KRD 227

Query: 537 KTKYSTF 517
            TK+  F
Sbjct: 228 VTKFCGF 234


>07_03_0999 - 23216665-23217419,23217626-23217956
          Length = 361

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -1

Query: 660 NNQLKEQTWSKLAKEFNS--LSSFVFRSDKTLRAKYDNIKKRAKTKYSTF 517
           N++  EQ W  +A+EFNS   S+   R+ K  R  +DN+ KR  TK+  F
Sbjct: 117 NDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNV-KRDVTKFCGF 165


>03_01_0333 + 2624073-2625185
          Length = 370

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 124 LPEVLCLGWSRHIFPLFPLLLLSVKRQNCTNLPFL*NSHHI 246
           LP  +   W+R+ FPL    +LSV +  C +L F  N+ H+
Sbjct: 62  LPNPILRLWNRYFFPLSEHKILSVDKSGC-SLLFDANTRHL 101


>01_06_0675 +
           31092877-31092916,31093349-31093503,31093570-31093677,
           31094283-31094487,31094858-31094955,31095052-31095135,
           31095227-31095304,31095462-31095554,31095646-31095675,
           31095932-31096273,31096353-31096434,31096527-31096622,
           31096728-31096907,31097002-31097108,31097207-31097308,
           31097611-31097666,31097749-31098002,31098077-31098240,
           31098564-31098747,31098825-31098969,31099561-31099661,
           31099803-31099870
          Length = 923

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 657 NQLKEQTWSKLAKEFNSLSSFVFRSDKTLRAKYDNIKKRAKTKYSTFRRSLYGTG 493
           +QLK Q WSK A  F S  +    S K ++    +IK+       T+R  +   G
Sbjct: 385 SQLKSQLWSKKANIFQSFMNNQKLSIKDIKISSQSIKQEMYALQMTWRDEISNIG 439


>05_07_0260 -
           28739035-28739085,28739316-28739596,28740545-28740572,
           28740653-28740749,28741216-28741272,28741353-28741415,
           28741533-28741621,28741779-28741865,28742041-28742162,
           28742245-28742500,28742595-28742744,28743120-28743278,
           28743820-28743892,28743968-28744024,28744115-28744243,
           28744469-28744560,28745220-28745252
          Length = 607

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 117 LFFAGSAVSWLVSAYFSFVSFVITICKKT--KLHQFTIFVKFTSYFCL 254
           LF  G+ V+  ++A + +  ++  + K T  K H +T ++  T Y CL
Sbjct: 374 LFIKGAIVTLSLTAGYLWYEYIYRLDKITYNKYHPYTSWIPITVYICL 421


>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
          Length = 223

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -1

Query: 645 EQTWSKLAKEFNSLSSFVFRSDKTLRAKYDNIKKRAKTKYSTFRRSLYG 499
           +Q   ++ KE+  +S  +  + + ++AKY  I   A++  S   RS+ G
Sbjct: 167 QQLTDEVDKEYKKMSDSINENTEMIKAKYKQIMAEAQSSTSRGIRSILG 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,759,444
Number of Sequences: 37544
Number of extensions: 341092
Number of successful extensions: 770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)