Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25c21
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 95 3e-20
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066... 92 3e-19
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140... 90 1e-18
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 86 2e-17
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000... 75 4e-14
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469... 50 1e-06
02_01_0550 + 4044683-4044784,4044862-4044975,4045277-4045360,404... 42 3e-05
08_02_0717 + 20372728-20372836,20372936-20373078,20374131-203742... 38 0.006
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 31 0.51
05_05_0263 - 23673014-23673697,23673772-23674188 29 2.7
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 27 8.3
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 95.5 bits (227), Expect = 3e-20
Identities = 50/125 (40%), Positives = 70/125 (56%)
Frame = +3
Query: 210 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSP 389
++ YT L I+ ++V S+ GKTF T +P G++IA V F G P
Sbjct: 65 QVNYTQLLIDGKFVDSASGKTFPTLDPRTGELIAHVAEGDAEDINRAVHAARKAFDEG-P 123
Query: 390 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGW 569
W M A ER ++ + ADLIE+ +A+LET DNGKPY + ++ + +RYYAGW
Sbjct: 124 WPKMTAYERSRILLRFADLIEKHNDEIAALETWDNGKPYAQAANIEVPMVARLMRYYAGW 183
Query: 570 ADKIH 584
ADKIH
Sbjct: 184 ADKIH 188
>06_03_0627 +
22903346-22903523,22906010-22906152,22906235-22906618,
22906980-22907069,22907147-22907320,22907414-22907551,
22907719-22907856,22907958-22908019,22908240-22908513
Length = 526
Score = 92.3 bits (219), Expect = 3e-19
Identities = 52/125 (41%), Positives = 68/125 (54%)
Frame = +3
Query: 210 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSP 389
EI YT LFIN +V ++ GKTF+T +P G VIA V F G
Sbjct: 42 EIRYTKLFINGRFVDAASGKTFETRDPRTGDVIARVAEGDKEDVDLAVKAAREAFDHGE- 100
Query: 390 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGW 569
W M SERG ++ K A+++ER LA+LE+LD GKP + D+ + LRY+AG
Sbjct: 101 WPRMSGSERGRVMAKYAEVVERHADELAALESLDAGKPLAAARAVDVGECVGILRYFAGA 160
Query: 570 ADKIH 584
ADKIH
Sbjct: 161 ADKIH 165
>01_05_0545 +
23109920-23110040,23113363-23113505,23113626-23114009,
23114106-23114219,23114310-23114483,23114608-23114745,
23114884-23115021,23115094-23115155,23115268-23115541
Length = 515
Score = 90.2 bits (214), Expect = 1e-18
Identities = 50/125 (40%), Positives = 68/125 (54%)
Frame = +3
Query: 210 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSP 389
EI +T LFIN E+V ++ GKTFKT +P G V+A + F+ G
Sbjct: 23 EIKFTKLFINGEFVDAASGKTFKTRDPRTGDVLAHIAEADKADVDLAVKAAREAFEHGK- 81
Query: 390 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGW 569
W M ER ++NKLADL+E+ LA+L+ D GK D+ A+ + +RYYAG
Sbjct: 82 WPRMSGYERSRVMNKLADLVEQHADELAALDGADAGKLLTLGKIIDMPAAAQMMRYYAGA 141
Query: 570 ADKIH 584
ADKIH
Sbjct: 142 ADKIH 146
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 86.2 bits (204), Expect = 2e-17
Identities = 47/125 (37%), Positives = 65/125 (52%)
Frame = +3
Query: 210 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSP 389
++ YT L IN +V ++ GKTF T +P G VIA V F G P
Sbjct: 69 DVKYTKLLINGNFVDAASGKTFATVDPRTGDVIARVAEGDAEDVNRAVAAARRAFDEG-P 127
Query: 390 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGW 569
W M A ER ++ + ADLIE+ +A+LET D GK + + ++ + +RYY GW
Sbjct: 128 WPRMTAYERCRVLLRFADLIEQHADEIAALETWDGGKTLEQTTGTEVPMVARYMRYYGGW 187
Query: 570 ADKIH 584
ADKIH
Sbjct: 188 ADKIH 192
>01_05_0544 +
23098921-23098953,23099209-23099272,23099942-23100084,
23100246-23100719,23100950-23101123,23101230-23101367,
23101489-23101589,23101910-23102183
Length = 466
Score = 74.9 bits (176), Expect = 4e-14
Identities = 40/107 (37%), Positives = 56/107 (52%)
Frame = +3
Query: 264 GKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLAD 443
GKTF+T +P G+VIA++ F G PW M RG +++K AD
Sbjct: 33 GKTFETRDPRTGEVIAKIAEGDKADIDLAVKAAREAFDHG-PWPRMSGFARGRILHKFAD 91
Query: 444 LIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 584
L+E+ LA+L+T+D GK + D+ LRYYAG ADK+H
Sbjct: 92 LVEQHVEELAALDTVDAGKLFAMGKLVDIPGGANLLRYYAGAADKVH 138
>04_04_0154 -
23146445-23146535,23146689-23146795,23146933-23146993,
23147070-23147221,23147306-23147383,23147696-23147809,
23147880-23147956,23148128-23148194,23148341-23148406,
23148528-23148651,23148733-23148825,23149446-23149594,
23149681-23149761,23150502-23150644,23150758-23150872
Length = 505
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Frame = +3
Query: 225 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKL--GSPWRT 398
GLFI W + S G+ NPA I ++ F G W
Sbjct: 11 GLFIGGGWREPSLGRRLPVVNPATEATIGDIPAATAEDVELAVSAARDAFGRDGGRHWSR 70
Query: 399 MDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADK 578
+ R + +A I+ ++YLA LETLD+GKP D GD+ YYA A+
Sbjct: 71 APGAVRAKYLKAIAAKIKDKKSYLALLETLDSGKPL-DEAAGDMEDVAACFEYYADLAEA 129
Query: 579 I 581
+
Sbjct: 130 L 130
>02_01_0550 +
4044683-4044784,4044862-4044975,4045277-4045360,
4045818-4045917,4046923-4046971,4047071-4047158,
4047251-4047361,4047771-4047833,4047942-4048052,
4048517-4048582,4048689-4048766,4049553-4049630,
4049784-4049850,4049930-4050015,4050301-4050333,
4050426-4050458,4050754-4050854,4050986-4051071,
4051478-4051584,4051683-4051839,4051854-4051984
Length = 614
Score = 41.5 bits (93), Expect(2) = 3e-05
Identities = 29/104 (27%), Positives = 45/104 (43%)
Frame = +3
Query: 273 FKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIE 452
+ +NPA G+ +A V F W + A+ER + K DLI
Sbjct: 99 YLVQNPATGETLANVSCMGSKETSDAIASAHSTFY---SWSKLTANERSKALRKWHDLII 155
Query: 453 RDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 584
+ LA L TL+ GKP K++ Y + + Y+A A +I+
Sbjct: 156 SHKEELALLMTLEQGKPMKEALVEVTYGA-SFIEYFAEEAKRIY 198
Score = 23.4 bits (48), Expect(2) = 3e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 213 ILYTGLFINNEWVKSSDGKTFKTEN 287
+L T I +WV + DGKT + N
Sbjct: 51 LLRTQGLIGGKWVDAYDGKTIEVVN 75
>08_02_0717 +
20372728-20372836,20372936-20373078,20374131-20374211,
20374307-20374510,20374789-20374796,20375153-20375245,
20375377-20375500,20375585-20375650,20375841-20375907,
20376600-20376676,20377032-20377145,20377546-20377623,
20377705-20377856,20377960-20378020,20378292-20378398,
20378497-20378562,20379099-20379177,20379671-20379967
Length = 641
Score = 37.9 bits (84), Expect = 0.006
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Frame = +3
Query: 228 LFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKL--GSPWRTM 401
LF+ EW + G+ NPA I E+ K G W
Sbjct: 10 LFVAGEWRAPALGRRLPVVNPATESPIGEIPAGTAEDVDAAVAAAREALKRNRGRDWARA 69
Query: 402 DASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKI 581
+ R + +A I ++ LA LETLD GKP ++ + D+ Y+A A+ +
Sbjct: 70 PGAVRAKYLRAIAAKIIERKSELARLETLDCGKPLDEAAW-DMDDVAGCFEYFADLAESL 128
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 432 KLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKN 548
K+ L R YLASL + D+ P KD F ++YA+ N
Sbjct: 287 KIYRLRNPSRKYLASLSSYDSSNPTKDWGFPNIYANSDN 325
>05_05_0263 - 23673014-23673697,23673772-23674188
Length = 366
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 378 LGSPWRTMDASERGALINKLADLIERDR 461
+ SPWR +DA G ++ +L L++R R
Sbjct: 1 MDSPWRDLDADVLGFILKRLPCLVDRRR 28
>03_05_0223 -
22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 486 LDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 584
LD+ KP GD +++ + R GW D+I+
Sbjct: 388 LDSSKPISGDDLGDSFSTDEPARKEKGWVDEIY 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,393
Number of Sequences: 37544
Number of extensions: 304092
Number of successful extensions: 797
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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