Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25c20
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...   177   1e-45
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    66   5e-12
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    55   7e-09
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    28   1.2  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   2.8  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   4.9  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   4.9  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   4.9  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    25   6.5  

>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score =  177 bits (431), Expect = 1e-45
 Identities = 85/129 (65%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
 Frame = +1

Query: 220 MNIRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKM 399
           M+IR AR SDL  MQ+CNL  LPENYQ+KYY YH +SWP LSYVA D KG +VGYVLAKM
Sbjct: 1   MDIRPARISDLTGMQNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKM 60

Query: 400 EEDGEDN-RHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAAL 576
           EE+ +D   HGHITS++V RS+R LGLA++LM Q+  AMVE + AKY+SLHVRKSNRAA+
Sbjct: 61  EEEPKDGIPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEVYGAKYMSLHVRKSNRAAI 120

Query: 577 NLYTNSLGF 603
           +LY ++L F
Sbjct: 121 HLYRDTLQF 129


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
 Frame = +1

Query: 238 RPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGH--IVGYVLAKMEEDG 411
           + +DL +  + NL  L E + + +Y  +   WP L  V E +     ++GY++ K E  G
Sbjct: 8   KATDLFSFNNINLDPLTETFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIMGKSEGTG 67

Query: 412 EDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTN 591
           ++  H H+T++ V  + RRLGLA+ +M+     +     A +V L VR SN  A++ Y  
Sbjct: 68  KE-WHTHVTAITVAPNSRRLGLARTMMDYLE-TVGNSENAFFVDLFVRASNALAIDFY-K 124

Query: 592 SLGF 603
            LG+
Sbjct: 125 GLGY 128


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 36/107 (33%), Positives = 53/107 (49%)
 Frame = +1

Query: 283 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 462
           L E Y    Y Y    WP+ S+VA D     +G V+ K +        G+I  LA+ + +
Sbjct: 23  LSEPYSKYVYRYFVHQWPEFSFVALDND-RFIGAVICKQDVHRGTTLRGYIAMLAIVKEY 81

Query: 463 RRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGF 603
           R  G+A KL  QASL +++   A+ + L     N AA++ Y   LGF
Sbjct: 82  RGQGIATKL-TQASLDVMKNRGAQEIVLETEVDNEAAMSFY-ERLGF 126


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
 Frame = +1

Query: 343 SYVAEDEKGHIVGY---VLAKMEEDGEDNRHGHITSLAVKRSHRRLGLA-QKLMNQASLA 510
           ++V E  +  IVG         E+D +D+ HG          H R G+A Q++ N  S  
Sbjct: 558 AFVEEKNRYLIVGTSTSAFTSNEDDDDDDGHG----------HNRFGVAFQEVANMTSAT 607

Query: 511 M-VECFQAKYVSLHVRKSNRAALNLYTNSLGFK 606
           + ++CF+A  +     +  ++ L ++  SL FK
Sbjct: 608 LQMDCFEASVI-----ECQKSDLGVFLESLSFK 635


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 337 GAKKVHGRSNISSDSSLADTISC 269
           G K VHG  N++S  +++D + C
Sbjct: 577 GGKAVHGLVNLASSRNVSDRVKC 599


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 432 VTMTIILTVLFHFCQNISNNMS 367
           +  +I+LT+LF+F  N+S+ M+
Sbjct: 278 IPFSIVLTILFYFDHNVSSVMA 299


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 148 TYHLVVLEQIEIWINSTSKQCTNFKI*LIGEVHKIKSLEYLL*PNFLKY 2
           T H +V  +  +W+ S S Q T   + ++  V K  S+E LL P   K+
Sbjct: 293 TLHDLVSTRCSVWLTSPSSQRTTKDLEVLNNVLK-DSIEPLLLPTVNKF 340


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 3   YFKKFGYSRYSKDLIL*TSPI 65
           YF++FGY+ Y   L+L  +PI
Sbjct: 343 YFRRFGYNDYQLYLLLSCAPI 363


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 420 IILTVLFHFCQNISNNMSFFIFSYITELGP 331
           ++LT L H    + +N + F+  Y+ +L P
Sbjct: 252 VVLTTLMHMAWALLDNPNLFVEPYVQQLMP 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,335
Number of Sequences: 5004
Number of extensions: 45497
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)