Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25c19
(479 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137; Eukar... 257 1e-67
UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58; Eukary... 243 2e-63
UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal ... 160 1e-38
UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e cont... 159 3e-38
UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia... 136 3e-31
UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative; ... 124 8e-28
UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1; Encepha... 116 4e-25
UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10; Archa... 113 1e-24
UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4; Euryar... 113 2e-24
UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9; Euryar... 112 3e-24
UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4; Thermo... 111 6e-24
UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11; Archa... 109 3e-23
UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, wh... 108 7e-23
UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 100 2e-20
UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4; Methan... 99 6e-20
UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5; Haloba... 95 5e-19
UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p... 92 5e-18
UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiell... 91 2e-17
UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 88 8e-17
UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza ... 86 3e-16
UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1; uncul... 85 8e-16
UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1; Nanoar... 80 3e-14
UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n... 70 2e-11
UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14; Bacter... 59 6e-08
UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory ... 58 1e-07
UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole geno... 48 8e-05
UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis... 47 3e-04
UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycopla... 47 3e-04
UniRef50_Q2JL76 Cluster: 30S ribosomal protein S13; n=212; cellu... 45 8e-04
UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellul... 45 8e-04
UniRef50_Q6G2Y7 Cluster: 30S ribosomal protein S13; n=20; cellul... 44 0.002
UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia... 43 0.004
UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellu... 42 0.005
UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of str... 38 0.12
UniRef50_Q8FS35 Cluster: 30S ribosomal protein S13; n=42; Bacter... 38 0.12
UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5; Eurotio... 38 0.15
UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7; Pezizom... 38 0.15
UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1; ... 37 0.20
UniRef50_Q6A6Q8 Cluster: 30S ribosomal protein S13; n=32; cellul... 37 0.20
UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1; Oltmannsiel... 37 0.27
UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomona... 36 0.36
UniRef50_A0CSW0 Cluster: Chromosome undetermined scaffold_26, wh... 36 0.36
UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4; Endopterygota|... 36 0.62
UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1; ... 36 0.62
UniRef50_A0NKF0 Cluster: Rhamnosyltransferase; n=1; Oenococcus o... 35 0.82
UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma ... 35 0.82
UniRef50_Q5A357 Cluster: Potential mitochondrial ribosomal prote... 35 1.1
UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=... 34 1.4
UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit... 34 1.9
UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium lot... 33 2.5
UniRef50_A6LHC7 Cluster: Putative outer membrane protein, probab... 33 2.5
UniRef50_Q8M1G5 Cluster: Ribosomal protein S13; n=1; Chaetosphae... 33 2.5
UniRef50_Q5CLQ5 Cluster: COG1752: esterase of the alpha-beta hyd... 33 3.3
UniRef50_P08977 Cluster: Mitochondrial ribosomal protein S13; n=... 33 3.3
UniRef50_Q2AKW7 Cluster: Ribosomal protein S13; n=1; Bacillus we... 33 4.4
UniRef50_A6LXE0 Cluster: Putative uncharacterized protein precur... 33 4.4
UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=... 33 4.4
UniRef50_A7S3C9 Cluster: Predicted protein; n=1; Nematostella ve... 32 5.8
UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast ... 32 5.8
UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus laev... 32 7.7
UniRef50_Q7RQE1 Cluster: Protein factor associated with neutral-... 32 7.7
UniRef50_Q4JR61 Cluster: Putative uncharacterized protein; n=1; ... 32 7.7
>UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137;
Eukaryota|Rep: 40S ribosomal protein S18 - Drosophila
melanogaster (Fruit fly)
Length = 152
Score = 257 bits (629), Expect = 1e-67
Identities = 118/140 (84%), Positives = 130/140 (92%)
Frame = +3
Query: 60 MSLVIPDXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLVIP+ FQHILRIMNTNIDGKRKV AMTAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 240 EEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAX 419
EEEV+K++TI+SNP QYK+P+WFLNR KDI+DGKY QLTSSNLDSKLR+DLERLKKI +
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 420 RGMRHYWGLRVRGQHTXTTG 479
RG+RHYWGLRVRGQHT TTG
Sbjct: 121 RGLRHYWGLRVRGQHTKTTG 140
>UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58;
Eukaryota|Rep: 40S ribosomal protein S18 - Homo sapiens
(Human)
Length = 152
Score = 243 bits (594), Expect = 2e-63
Identities = 108/140 (77%), Positives = 128/140 (91%)
Frame = +3
Query: 60 MSLVIPDXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 240 EEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAX 419
E+EVE++ITIM NPRQYKIPDWFLNR KD+ DGKYSQ+ ++ LD+KLREDLERLKKI A
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 420 RGMRHYWGLRVRGQHTXTTG 479
RG+RH+WGLRVRGQHT TTG
Sbjct: 121 RGLRHFWGLRVRGQHTKTTG 140
>UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal
protein S18; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S18 - Rattus norvegicus
Length = 170
Score = 160 bits (389), Expect = 1e-38
Identities = 78/140 (55%), Positives = 106/140 (75%)
Frame = +3
Query: 60 MSLVIPDXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
MSLVI + QHIL+++NTNID +++ FA+TA KG +RY+++VL+KA IDL K AGE T
Sbjct: 1 MSLVISEKSQHILQVLNTNIDEQQETAFAITATKGAEQRYAHVVLRKAGIDLTKMAGELT 60
Query: 240 EEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAX 419
E++VE++ITIM NPRQY+IP K + DG+ SQ+ ++ LD+KLRE+LERLKKI A
Sbjct: 61 EDKVERVITIMQNPRQYEIPQ------KGVRDGRCSQVPANGLDNKLREELERLKKIRAH 114
Query: 420 RGMRHYWGLRVRGQHTXTTG 479
RG+RH+WGL V Q T + G
Sbjct: 115 RGLRHFWGLHVHCQLTMSHG 134
>UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ribosomal protein S13p/S18e containing
protein - Tetrahymena thermophila SB210
Length = 155
Score = 159 bits (386), Expect = 3e-38
Identities = 75/142 (52%), Positives = 101/142 (71%), Gaps = 2/142 (1%)
Frame = +3
Query: 60 MSLVIP--DXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 233
MS VI F++I RI+NTNIDGKR A+T I+G+GRR++ I+ K ID + RAG
Sbjct: 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGL 60
Query: 234 CTEEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIX 413
TE++ KI ++++P + IP W LNR D DGK Q+ S+ LD+K+REDLERLKKI
Sbjct: 61 LTEDQCNKITDLIADPEAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIK 120
Query: 414 AXRGMRHYWGLRVRGQHTXTTG 479
+ RG+RH+WGL+VRGQHT T+G
Sbjct: 121 SHRGLRHFWGLKVRGQHTKTSG 142
>UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_8004_7540 - Giardia lamblia ATCC
50803
Length = 154
Score = 136 bits (328), Expect = 3e-31
Identities = 62/139 (44%), Positives = 92/139 (66%)
Frame = +3
Query: 63 SLVIPDXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 242
++V P+ ++ +LR+ NTNI GK + A+ IKG+GRR++N+ LKKA+ID+ KRAGE T
Sbjct: 3 TIVQPNDYRDLLRMFNTNIQGKVVLECALVGIKGIGRRFANVALKKANIDVHKRAGELTA 62
Query: 243 EEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXR 422
E + ++ ++ +P + IP W LNR D GK + + + S R DLERL+K R
Sbjct: 63 AEEDALMKVLEDPLSHGIPAWMLNRNNDFESGKDMHILVNTIASTHRADLERLRKTRCER 122
Query: 423 GMRHYWGLRVRGQHTXTTG 479
G+RH+ L+VRGQHT +TG
Sbjct: 123 GVRHHHNLKVRGQHTKSTG 141
>UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative;
n=3; Trichomonas vaginalis G3|Rep: Ribosomal protein
S13p/S18e, putative - Trichomonas vaginalis G3
Length = 155
Score = 124 bits (300), Expect = 8e-28
Identities = 55/135 (40%), Positives = 94/135 (69%)
Frame = +3
Query: 75 PDXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 254
P F+ ++R+++TN+DG+R + A+T I G+GRR++ V+++A +D +RAG T +E E
Sbjct: 8 PAAFRDMVRMLSTNVDGRRPLYLALTNISGIGRRFAYAVVRRAGLDPLRRAGTLTPKEEE 67
Query: 255 KIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRH 434
I++I+ NP +++IP W LNR D G+ + +++L + +R ++ER+KK+ RG+RH
Sbjct: 68 LIVSIIQNPTEHQIPVWMLNRRFDRATGQNTHWVATDLSANIRAEIERMKKMRMKRGIRH 127
Query: 435 YWGLRVRGQHTXTTG 479
GL+VRGQ T +TG
Sbjct: 128 GLGLKVRGQCTKSTG 142
>UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S18
- Encephalitozoon cuniculi
Length = 153
Score = 116 bits (278), Expect = 4e-25
Identities = 58/135 (42%), Positives = 85/135 (62%)
Frame = +3
Query: 75 PDXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 254
P Q+I+RI NTNIDG +++ FA+T I+G+G R + + K+ IDL KRAGE E+E++
Sbjct: 7 PAEVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMK 66
Query: 255 KIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRH 434
+I + +P IP+ ++N +DI+DG S L + LD+ LR +ER KK R R
Sbjct: 67 RISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRL 126
Query: 435 YWGLRVRGQHTXTTG 479
GL+VRGQ T + G
Sbjct: 127 DVGLKVRGQRTKSNG 141
>UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10;
Archaea|Rep: 30S ribosomal protein S13P - Sulfolobus
tokodaii
Length = 172
Score = 113 bits (273), Expect = 1e-24
Identities = 51/132 (38%), Positives = 85/132 (64%)
Frame = +3
Query: 84 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKII 263
F++I+R+ ++DG KV +A+ +KG+G + ++ K +D D+R GE ++E+++KI
Sbjct: 7 FKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIE 66
Query: 264 TIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWG 443
+++ + ++P+W NR KD G L +S+L +R D+ER KKI + RG+RH G
Sbjct: 67 NYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLG 126
Query: 444 LRVRGQHTXTTG 479
L+VRGQ T TTG
Sbjct: 127 LKVRGQRTRTTG 138
>UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanosarcina acetivorans
Length = 162
Score = 113 bits (272), Expect = 2e-24
Identities = 54/134 (40%), Positives = 81/134 (60%)
Frame = +3
Query: 78 DXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 257
+ +H++RIMNT++ G + V +A+T + GVGRR + ++ K A +D G EEEV K
Sbjct: 18 EELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAK 77
Query: 258 IITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHY 437
+ T + +P W LNR KD+ G+ L +++ RED+ LKK+ A RG+RH
Sbjct: 78 LDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHE 136
Query: 438 WGLRVRGQHTXTTG 479
GL+VRGQ T +TG
Sbjct: 137 RGLKVRGQRTKSTG 150
>UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanococcus jannaschii
Length = 150
Score = 112 bits (270), Expect = 3e-24
Identities = 52/131 (39%), Positives = 84/131 (64%)
Frame = +3
Query: 84 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKII 263
F++++R+ T++DG +K++ A+ I GVG + +++ A +D +K AG TEEEV+KI
Sbjct: 6 FKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIE 65
Query: 264 TIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWG 443
++++P ++ IP W NR KD V G+ + S+L +ED+ RLK+I RG+RH G
Sbjct: 66 EVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELG 125
Query: 444 LRVRGQHTXTT 476
L RGQ T +T
Sbjct: 126 LPCRGQRTKST 136
>UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S13P -
Thermoplasma acidophilum
Length = 171
Score = 111 bits (268), Expect = 6e-24
Identities = 48/132 (36%), Positives = 89/132 (67%)
Frame = +3
Query: 84 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKII 263
FQ+I+RI N +++G+R + A++ +KG+G R ++ ++ D+ +DK+ GE EE++EK+
Sbjct: 28 FQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLR 87
Query: 264 TIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWG 443
+ ++Y +P+W LN ++ V GK L S++L+ +++ED+ +KKI + +G+RH G
Sbjct: 88 EYVE-AKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKG 146
Query: 444 LRVRGQHTXTTG 479
+VRGQ T + G
Sbjct: 147 KKVRGQRTRSNG 158
>UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11;
Archaea|Rep: 30S ribosomal protein S13P - Uncultured
methanogenic archaeon RC-I
Length = 224
Score = 109 bits (262), Expect = 3e-23
Identities = 52/134 (38%), Positives = 83/134 (61%)
Frame = +3
Query: 78 DXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 257
D ++I+RI NT++DG + V FA+T IKG+G R S I+ ++A +D G E+V+K
Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDK 126
Query: 258 IITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHY 437
+ ++ N + +P W LNR +DI G+ L +L ++ED+ +KKI + +G+RH
Sbjct: 127 LRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHE 185
Query: 438 WGLRVRGQHTXTTG 479
G +VRGQ T +TG
Sbjct: 186 RGQKVRGQRTKSTG 199
>UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_89,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 193
Score = 108 bits (259), Expect = 7e-23
Identities = 57/134 (42%), Positives = 90/134 (67%), Gaps = 4/134 (2%)
Frame = +3
Query: 60 MSLVIP--DXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGE 233
MSLV+ D F+ I+RI+NTN+DGK+++ + + +IKG+GRR++ + K ++L KRAGE
Sbjct: 1 MSLVLEKADQFRQIIRILNTNVDGKQQMAYEIRSIKGIGRRFAIQICKVLRLNLTKRAGE 60
Query: 234 CTEEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIX 413
T+EE KI ++ QY +D+ +GK ++T++ L++KLREDLER+KKI
Sbjct: 61 LTDEEAHKITEVIKMVPQY---------IRDLKNGKNYEVTTNELETKLREDLERIKKIK 111
Query: 414 AXRG--MRHYWGLR 449
+ +RH+WGLR
Sbjct: 112 YSQWLCLRHHWGLR 125
>UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S13P -
Cenarchaeum symbiosum
Length = 227
Score = 100 bits (239), Expect = 2e-20
Identities = 44/132 (33%), Positives = 79/132 (59%)
Frame = +3
Query: 84 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKII 263
++HI+RI+ ++ G++K + + I+G+G ++ +L ID + G T+E+V I
Sbjct: 51 YKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASIE 110
Query: 264 TIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWG 443
++ +P P WFLNR KD+ G+ + +S+++ +R D+ER + + +G RH +G
Sbjct: 111 KLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMFG 170
Query: 444 LRVRGQHTXTTG 479
L+VRGQ T TG
Sbjct: 171 LKVRGQRTRNTG 182
>UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4;
Methanococcus|Rep: 30S ribosomal protein S13P -
Methanococcus maripaludis
Length = 149
Score = 98.7 bits (235), Expect = 6e-20
Identities = 44/128 (34%), Positives = 77/128 (60%)
Frame = +3
Query: 84 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKII 263
F+H +RI T+++GK + +A+ +KG+GR + V++ ++D ++AG +E+V KI
Sbjct: 6 FKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIE 65
Query: 264 TIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWG 443
+++ +P + IP W NR KD+ G L ++L ++ED+ +KKI +G+RH
Sbjct: 66 SVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHELR 125
Query: 444 LRVRGQHT 467
L RGQ T
Sbjct: 126 LPCRGQRT 133
>UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 95.5 bits (227), Expect = 5e-19
Identities = 44/134 (32%), Positives = 79/134 (58%)
Frame = +3
Query: 78 DXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 257
+ ++ +RI T++DG + V A+T + G+G R + I+ +KAD+D G+ ++ +E+
Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIER 77
Query: 258 IITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHY 437
++ + N +P+W N KD G+ + T ++L R+D+ R+K I + RG+RH
Sbjct: 78 VVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHK 136
Query: 438 WGLRVRGQHTXTTG 479
G +VRGQ T +TG
Sbjct: 137 RGQKVRGQRTKSTG 150
>UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p -
Drosophila melanogaster (Fruit fly)
Length = 246
Score = 92.3 bits (219), Expect = 5e-18
Identities = 40/48 (83%), Positives = 46/48 (95%)
Frame = +3
Query: 156 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIP 299
IKGVGRRYSNIVLKKAD+DL KRAGECTEEEV+K++TI+SNP QYK+P
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48
>UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiella
natans|Rep: Ribosomal protein S18 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 159
Score = 90.6 bits (215), Expect = 2e-17
Identities = 44/128 (34%), Positives = 71/128 (55%)
Frame = +3
Query: 96 LRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMS 275
+RI + NI+G F + IKGVG R SN++ K D++ + + ++E+++ I
Sbjct: 19 IRIFDCNINGSLSCNFGLRNIKGVGIRMSNVLRKILKKDINYKLYNIEKADLEEVVNIFG 78
Query: 276 NPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVR 455
+ P W +NR D + G + S+ LDS L+ED++RL I +G+RH L+ R
Sbjct: 79 KSSRKAFPSWLMNRRADFLTGDNLHVLSTVLDSALQEDIKRLVTIKNNKGLRHLSRLKTR 138
Query: 456 GQHTXTTG 479
GQHT + G
Sbjct: 139 GQHTKSNG 146
>UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2;
Thermoproteaceae|Rep: 30S ribosomal protein S13P -
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Length = 152
Score = 88.2 bits (209), Expect = 8e-17
Identities = 45/129 (34%), Positives = 74/129 (57%)
Frame = +3
Query: 93 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 272
I+R+ +T+++G ++V +A+ I+G+G + + K ID G EE++ K+ +
Sbjct: 8 IVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAV 67
Query: 273 SNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRV 452
N + P WFLNR KD G+ L S L + D++ +KK+ + +G+RH GL+V
Sbjct: 68 RNLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKV 126
Query: 453 RGQHTXTTG 479
RGQ T TTG
Sbjct: 127 RGQRTVTTG 135
>UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Ribosomal protein
S18-like - Oryza sativa subsp. japonica (Rice)
Length = 145
Score = 86.2 bits (204), Expect = 3e-16
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +3
Query: 321 KDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRGQHTXTTG 479
KD DG++SQ+ S+ LD KLR+DLERLKKI RG+RHYWGLRVRGQHT TTG
Sbjct: 81 KDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTG 133
>UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1;
uncultured euryarchaeote ARMAN-2|Rep: SSU ribosomal
protein S13AB - uncultured euryarchaeote ARMAN-2
Length = 177
Score = 85.0 bits (201), Expect = 8e-16
Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
Frame = +3
Query: 93 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSN----IVLKKADIDLDKRAGECTEEEVEKI 260
I+RI N +I+G + A+ +KG+G+ S+ ++ K +ID G E +V ++
Sbjct: 19 IVRIANKDINGGLNIQRALDQVKGIGQTMSHSLSYVIEHKFNIDPSTPIGSLNESQVTQV 78
Query: 261 ITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYW 440
++ +P +Y +P + LNR D+ GK L ++L +R+ + R + RG RH +
Sbjct: 79 EELIKDPHKYGVPKYLLNRRNDMDTGKDMHLIGNDLIFAVRQSINRDVTLRVWRGYRHQY 138
Query: 441 GLRVRGQHTXTTG 479
G +VRGQHT +TG
Sbjct: 139 GQKVRGQHTRSTG 151
>UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S13P -
Nanoarchaeum equitans
Length = 153
Score = 79.8 bits (188), Expect = 3e-14
Identities = 40/125 (32%), Positives = 67/125 (53%)
Frame = +3
Query: 93 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 272
I+ I + ++DG + + + + GV +++ V ID ++ G ++EE+EK+ +
Sbjct: 13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDAL 72
Query: 273 SNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRV 452
NP +Y IP W NR +D GK L ++ + D++R +I + RG RH GL V
Sbjct: 73 RNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPV 132
Query: 453 RGQHT 467
RGQ T
Sbjct: 133 RGQRT 137
>UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 14 contig 1, DNA
sequence - Ostreococcus tauri
Length = 272
Score = 70.1 bits (164), Expect = 2e-11
Identities = 40/135 (29%), Positives = 67/135 (49%)
Frame = -1
Query: 464 VLTTHTKAPVMSHPSXSXNLLEPLQIFTEF*IQVGGGQLAVFTINNILXPI*EPVWYLIL 285
VLTT T APV+S S NLL+ L++ + +++ G L I I+ + EP+ L
Sbjct: 44 VLTTDTDAPVVSQTSVVSNLLQTLEVVAQLRVELVGHHLRELAILEIVLAVQEPIRNSEL 103
Query: 284 PRIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLAFAIDVRIH 105
R+ HD F L L +I++ F + VG A+ D H+L ++V +
Sbjct: 104 SRVGHDHHQRFQLRGGELPGALPEIDLSLFAHQVGEAAADPLDLGQGVHHLLTTVNVGVE 163
Query: 104 DTKNMLKXVWNDQRH 60
D ++L+ + +D+ H
Sbjct: 164 DADDVLEIITDDEAH 178
>UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14;
Bacteria|Rep: 30S ribosomal protein S13 - Thermotoga
maritima
Length = 125
Score = 58.8 bits (136), Expect = 6e-08
Identities = 45/123 (36%), Positives = 64/123 (52%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI+ + +KV A+T I G+GR S +LK ID +KR G+ T+EE+ KI
Sbjct: 3 RIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKI------ 56
Query: 279 PRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRG 458
+Y I D F V+G+ L S++ ++ RL +I RG+RH GL VRG
Sbjct: 57 -TKY-IQDHFK------VEGE--------LRSEVERNIRRLIEIGCYRGIRHKLGLPVRG 100
Query: 459 QHT 467
Q T
Sbjct: 101 QKT 103
>UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory
specific medium-chain acyl CoA synthetase; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
olfactory specific medium-chain acyl CoA synthetase -
Ornithorhynchus anatinus
Length = 176
Score = 58.0 bits (134), Expect = 1e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +3
Query: 270 MSNPRQYKIPDWFLNRXKDIVDGKYSQL 353
M NPRQYKIPDWFLNR KD+ DGKYSQ+
Sbjct: 1 MQNPRQYKIPDWFLNRQKDVKDGKYSQV 28
>UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_31, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 48
Score = 48.4 bits (110), Expect = 8e-05
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 50 LXQNVAGHSRXISTYSSYHEYEHRWQTQGYVCDDGYQRCWP 172
L +V G R IST++S ++E RW+T+ +VC D +QR WP
Sbjct: 5 LSMSVLGSERGISTHTSCAQHERRWETEDHVCSDLHQRYWP 45
>UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S13 -
Victivallis vadensis ATCC BAA-548
Length = 131
Score = 46.8 bits (106), Expect = 3e-04
Identities = 36/125 (28%), Positives = 60/125 (48%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI+ +I G ++V F++ + GVG + +++K ID D +A + T +++ I I+ +
Sbjct: 3 RIIGVDIPGNKRVEFSLRYLYGVGPAKALEIIQKVGIDPDLKAKDLTPDQIGAITKILQD 62
Query: 279 PRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRG 458
D+ L +L L D+ RL++I RG+RH L VRG
Sbjct: 63 ---------------DL-------LVEGDLRRTLAADIRRLQQINCYRGIRHRRSLPVRG 100
Query: 459 QHTXT 473
Q T T
Sbjct: 101 QRTKT 105
>UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S13 -
Mycoplasma hyopneumoniae (strain 232)
Length = 137
Score = 46.8 bits (106), Expect = 3e-04
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMS- 275
R++N I ++++ A+ +I G+G+ + +++K + EE+ K I++
Sbjct: 3 RVLNVEIPNHKRIVIALCSIFGIGKSLATEIVEKT--------AKLQEEKFGKKFPILTE 54
Query: 276 NPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVR 455
N + +I + L +D+ + T +L +++ +++RL +I RG+RH GL VR
Sbjct: 55 NTKVKEINEEVLQVIRDVAK---TYKTEGDLHREVQSNIKRLIEIKCYRGIRHRKGLPVR 111
Query: 456 GQHT 467
GQ T
Sbjct: 112 GQVT 115
>UniRef50_Q2JL76 Cluster: 30S ribosomal protein S13; n=212; cellular
organisms|Rep: 30S ribosomal protein S13 - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 127
Score = 45.2 bits (102), Expect = 8e-04
Identities = 38/125 (30%), Positives = 57/125 (45%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI +I +++V A+T I G+G S +L K I+ D R + T+ EV + T+
Sbjct: 3 RIAGVDIPREKRVEIALTYIYGIGLTRSRQILAKTGINPDTRTRDLTDAEVAALRTV--- 59
Query: 279 PRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRG 458
V+G+Y +L + +++RL I RG RH GL VRG
Sbjct: 60 -----------------VEGEYQ--VEGDLRRQEAMNIKRLIDIGTYRGRRHRLGLPVRG 100
Query: 459 QHTXT 473
Q T T
Sbjct: 101 QRTRT 105
>UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellular
organisms|Rep: 30S ribosomal protein S13 - Aquifex
aeolicus
Length = 126
Score = 45.2 bits (102), Expect = 8e-04
Identities = 34/125 (27%), Positives = 57/125 (45%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI ++ +++ A+T I G+G + + +K I KR GE T +E
Sbjct: 3 RIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDE---------- 52
Query: 279 PRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRG 458
LN + +D Y +L +++ ++++LK + RG+RH GL VRG
Sbjct: 53 ----------LNTLRKFIDENYK--VEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRG 100
Query: 459 QHTXT 473
Q T T
Sbjct: 101 QQTRT 105
>UniRef50_Q6G2Y7 Cluster: 30S ribosomal protein S13; n=20; cellular
organisms|Rep: 30S ribosomal protein S13 - Bartonella
henselae (Rochalimaea henselae)
Length = 122
Score = 44.0 bits (99), Expect = 0.002
Identities = 33/125 (26%), Positives = 58/125 (46%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI NI ++V+ A+ I G+G +++ + KK I + +R E ++ EV +I
Sbjct: 3 RIAGVNIPTNKRVIIALQYIHGIGPKFAQEITKKVGIPIGRRVHELSDAEVLQI------ 56
Query: 279 PRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRG 458
++ +D Y +L ++ +++RL + RG+RH L VRG
Sbjct: 57 --------------REAIDQGYQ--VEGDLRREVAMNVKRLMDLGCYRGLRHRRSLPVRG 100
Query: 459 QHTXT 473
Q T T
Sbjct: 101 QRTHT 105
>UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_7513_8304 - Giardia lamblia ATCC
50803
Length = 263
Score = 42.7 bits (96), Expect = 0.004
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 4/143 (2%)
Frame = -1
Query: 476 SSXSVLTTHTKAPVMSHPSXSXNLLEPLQIFTEF*IQVGGG---QLAVFTINNILXPI*E 306
S VL + + V++ + + + E LQ+ T + G G + VF I+ I
Sbjct: 25 SGLCVLPANLQVVVVADTALAASFTETLQVRT---VGRGYGIDQNVHVFARFKIIVTIKH 81
Query: 305 PVWYLILPRIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANTFDSRHRKHNLAF 126
P W + + D L C S V +NVGF E N+G N +S
Sbjct: 82 PGWNAVGEGVLKDLHESILLGRCELTSAFVNVNVGFLEGNIGKAAPNPLNSDKGTLKYDL 141
Query: 125 AIDVRIHDTKNMLKXV-WNDQRH 60
A+DV + T+ + V ND+ H
Sbjct: 142 ALDVCVKHTQEVPVVVGLNDRCH 164
>UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellular
organisms|Rep: 30S ribosomal protein S13 - Zymomonas
mobilis
Length = 122
Score = 42.3 bits (95), Expect = 0.005
Identities = 33/125 (26%), Positives = 58/125 (46%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
RI NI ++V A+T I G+G + ++ K I ++R + ++ EV +I
Sbjct: 3 RIAGVNIPTNKRVEIALTYIHGIGPTTAKKIVTKLGIAPERRVQDLSDNEVLQI------ 56
Query: 279 PRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRG 458
++ +D Y+ +L ++ +++RL + RG+RH GL VRG
Sbjct: 57 --------------REAIDADYT--VEGDLRRQVAMNIKRLMDLACYRGLRHRKGLPVRG 100
Query: 459 QHTXT 473
Q T T
Sbjct: 101 QRTHT 105
>UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of strain
CLIB122 of Yarrowia lipolytica; n=2;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome B
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 156
Score = 37.9 bits (84), Expect = 0.12
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 360 SNLDSKLREDLERLKKIXAXRGMRHYWGLRVRGQHTXTTG 479
S+L K+ D+ER +K + G RH G+ V+GQ T T G
Sbjct: 70 SDLAKKINADIERKRKTGSYVGRRHVMGMPVKGQKTRTNG 109
>UniRef50_Q8FS35 Cluster: 30S ribosomal protein S13; n=42;
Bacteria|Rep: 30S ribosomal protein S13 -
Corynebacterium efficiens
Length = 122
Score = 37.9 bits (84), Expect = 0.12
Identities = 27/125 (21%), Positives = 58/125 (46%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
R+ ++ +++ A+T I G+G + +L++ + D R T+E++ +
Sbjct: 3 RLAGVDLPRNKRMEIALTYIYGIGPARAKQLLEETGVSPDLRTDNLTDEQIASL------ 56
Query: 279 PRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRG 458
+D+++ + +L +++ D+ R +I + +G+RH GL VRG
Sbjct: 57 --------------RDVIEATWK--VEGDLRREVQADIRRKIEIGSYQGLRHRRGLPVRG 100
Query: 459 QHTXT 473
Q T T
Sbjct: 101 QRTKT 105
>UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5;
Eurotiomycetidae|Rep: 40S ribosomal protein S13 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 169
Score = 37.5 bits (83), Expect = 0.15
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 360 SNLDSKLREDLERLKKIXAXRGMRHYWGLRVRGQHTXT 473
++L ++ +D++RLK+ + RG RH GL VRGQ T T
Sbjct: 103 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQRTRT 140
>UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7;
Pezizomycotina|Rep: 40S ribosomal protein S13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 118
Score = 37.5 bits (83), Expect = 0.15
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 360 SNLDSKLREDLERLKKIXAXRGMRHYWGLRVRGQHTXT 473
++L ++ +D++RLK+ + RG RH GL VRGQ T T
Sbjct: 66 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQRTRT 103
>UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 82
Score = 37.1 bits (82), Expect = 0.20
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +3
Query: 360 SNLDSKLREDLERLKKIXAXRGMRHYWGLRVRGQHT 467
+ L +L++++ER++ + + RG RH GL VRGQ+T
Sbjct: 5 TELKRRLQDNIERMRTMGSYRGRRHAMGLPVRGQNT 40
>UniRef50_Q6A6Q8 Cluster: 30S ribosomal protein S13; n=32; cellular
organisms|Rep: 30S ribosomal protein S13 -
Propionibacterium acnes
Length = 123
Score = 37.1 bits (82), Expect = 0.20
Identities = 31/125 (24%), Positives = 55/125 (44%)
Frame = +3
Query: 99 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 278
R++ ++ +++ A+T I G+GR + LK I D R E T++++ +
Sbjct: 3 RLIGVDLPRDKRLEVALTYIYGIGRTRATETLKATGISGDLRVHELTDDQLVAL------ 56
Query: 279 PRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRG 458
+D ++ Y +L ++ D+ R +I +G RH GL VRG
Sbjct: 57 --------------RDHIEANYH--VEGDLRREVAADIRRKIEIGTYQGRRHRSGLPVRG 100
Query: 459 QHTXT 473
Q T T
Sbjct: 101 QRTRT 105
>UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1;
Oltmannsiellopsis viridis|Rep: Ribosomal protein S13 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 117
Score = 36.7 bits (81), Expect = 0.27
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3
Query: 375 KLREDLERLKKIXAXRGMRHYWGLRVRGQHTXT 473
K RE+++RL +I + RG RH GL RGQ T T
Sbjct: 72 KKRENIQRLVRISSYRGFRHTAGLPCRGQRTKT 104
>UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomonas
americana|Rep: Ribosomal protein S13 - Reclinomonas
americana
Length = 122
Score = 36.3 bits (80), Expect = 0.36
Identities = 30/127 (23%), Positives = 56/127 (44%)
Frame = +3
Query: 93 ILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIM 272
++ + NI+ +K+ FA+ AI G+G + + + ++ + + E ++ K+
Sbjct: 1 MIHLFGININSNKKIPFALKAIYGLGNKKVDELCSYMGLNPKLKMSDLNESQISKLC--- 57
Query: 273 SNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRV 452
+ I + FL S L +++RL I + RG+RH +GL V
Sbjct: 58 -----HYIEENFL--------------IESELRKNQTYNIKRLLDIKSYRGLRHAYGLPV 98
Query: 453 RGQHTXT 473
GQ T T
Sbjct: 99 HGQRTHT 105
>UniRef50_A0CSW0 Cluster: Chromosome undetermined scaffold_26, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_26,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 367
Score = 36.3 bits (80), Expect = 0.36
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 177 YSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDG 338
Y N + D + DK + E ++E E++IT++ + KI DW KD+ DG
Sbjct: 93 YQNAIDSAQD-EKDKYSRETLQKEKEELITLICEMKHSKIEDWLKTIKKDLPDG 145
>UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4;
Endopterygota|Rep: ENSANGP00000013280 - Anopheles
gambiae str. PEST
Length = 183
Score = 35.5 bits (78), Expect = 0.62
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +3
Query: 117 IDGKRKVMFAMTAIKGVGRRYSNIVLK---KADI-DLDKRAGECTEEEVEK 257
+D K KV A G+GR +S +LK K I DLD AGE T EE+EK
Sbjct: 1 MDLKNKVALVTGAATGLGRAFSEELLKHGAKVVICDLDSDAGELTVEELEK 51
>UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 130
Score = 35.5 bits (78), Expect = 0.62
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 360 SNLDSKLREDLERLKKIXAXRGMRHYWGLRVRGQHT 467
++L ++ +D++RLK+ RG RH GL VRGQ T
Sbjct: 65 NDLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQRT 100
>UniRef50_A0NKF0 Cluster: Rhamnosyltransferase; n=1; Oenococcus oeni
ATCC BAA-1163|Rep: Rhamnosyltransferase - Oenococcus
oeni ATCC BAA-1163
Length = 311
Score = 35.1 bits (77), Expect = 0.82
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 87 QHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIIT 266
QH ++ T + K +F + I + Y N + KK +L K GEC +E I
Sbjct: 215 QHSSNVVGTTGNNLFKKIFKIREI--FNKFYKNGLFKKQANELLKNYGECLSKEKRNAIN 272
Query: 267 I-MSNPRQYKIPDWFLNRXK 323
I +S+ RQ K W L + K
Sbjct: 273 IFLSSNRQLKEVFWILKKIK 292
>UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma
viride|Rep: Ribosomal protein S13 - Mesostigma viride
Length = 116
Score = 35.1 bits (77), Expect = 0.82
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 366 LDSKLREDLERLKKIXAXRGMRHYWGLRVRGQHTXT 473
L +++ + ERL KI + RG RH+ GL RGQ T T
Sbjct: 72 LINRIHLNKERLIKISSYRGFRHHRGLPARGQRTRT 107
>UniRef50_Q5A357 Cluster: Potential mitochondrial ribosomal protein
S13; n=2; Saccharomycetales|Rep: Potential mitochondrial
ribosomal protein S13 - Candida albicans (Yeast)
Length = 122
Score = 34.7 bits (76), Expect = 1.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 351 LTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRGQHTXTTG 479
L +L K+ D++ + I + G RH G VRGQ T T G
Sbjct: 66 LVEGHLKHKINNDIKMKRTIGSYAGSRHALGFPVRGQRTKTNG 108
>UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S13 - Prototheca wickerhamii
Length = 119
Score = 34.3 bits (75), Expect = 1.4
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 354 TSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRGQHT 467
T S++ R++++RL I + RG RH GL VRGQ +
Sbjct: 66 TGSDVRRFTRQNIQRLVNIHSYRGYRHIQGLPVRGQRS 103
>UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit
S37; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit S37 - Schizosaccharomyces
pombe (Fission yeast)
Length = 151
Score = 33.9 bits (74), Expect = 1.9
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +3
Query: 387 DLERLKKIXAXRGMRHYWGLRVRGQHTXT 473
D+ RL I RGMRH GL V GQ+T T
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQNTRT 104
>UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium
loti|Rep: Mll1963 protein - Rhizobium loti
(Mesorhizobium loti)
Length = 315
Score = 33.5 bits (73), Expect = 2.5
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -1
Query: 236 AFASTLVKINVGFFENNVG-VPPANTFDSRHRK-HNLAFAIDVRIHDTKNML 87
AFA T V+ VGF++ VG + +D +K H+ AF DV + DTK L
Sbjct: 23 AFAETPVEPTVGFYKYTVGDIEVTAIYDGIWKKPHDPAFIKDVSVEDTKAAL 74
>UniRef50_A6LHC7 Cluster: Putative outer membrane protein, probably
involved in nutrient binding; n=1; Parabacteroides
distasonis ATCC 8503|Rep: Putative outer membrane
protein, probably involved in nutrient binding -
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
/ NCTC11152)
Length = 531
Score = 33.5 bits (73), Expect = 2.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 174 RYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDW 305
RYS ++ KA+ + K G+ T+E V+ I ++ R +K DW
Sbjct: 410 RYSEVIYNKAEALMRKNGGKATQEVVDMINSV--RQRSFKAEDW 451
>UniRef50_Q8M1G5 Cluster: Ribosomal protein S13; n=1;
Chaetosphaeridium globosum|Rep: Ribosomal protein S13 -
Chaetosphaeridium globosum
Length = 122
Score = 33.5 bits (73), Expect = 2.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 378 LREDLERLKKIXAXRGMRHYWGLRVRGQHTXT 473
++ D+ RL I RG+RH GL +RGQ T T
Sbjct: 78 VQTDIRRLVTIGCYRGLRHIAGLPLRGQRTHT 109
>UniRef50_Q5CLQ5 Cluster: COG1752: esterase of the alpha-beta
hydrolase superfamily; n=2; Cryptosporidium|Rep:
COG1752: esterase of the alpha-beta hydrolase
superfamily - Cryptosporidium hominis
Length = 794
Score = 33.1 bits (72), Expect = 3.3
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Frame = +3
Query: 84 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKII 263
F +L+ +N +I K + + + SN K DK+ + E +I
Sbjct: 647 FVVVLKSLNDDIQRLNKTLITIDSFLKSSNNISNKATKLLKYIEDKQKKGIFSAKFEDVI 706
Query: 264 TIMSNPRQYK-----IPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKI 410
T++S Y I +N + IVD K+SQL + + LRE E K+
Sbjct: 707 TLLSLYEDYVEKLQGIRIKEINSRRIIVDSKHSQLILARIIIALREQNEHFPKL 760
>UniRef50_P08977 Cluster: Mitochondrial ribosomal protein S13;
n=160; Embryophyta|Rep: Mitochondrial ribosomal protein
S13 - Zea mays (Maize)
Length = 129
Score = 33.1 bits (72), Expect = 3.3
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 381 REDLERLKKIXAXRGMRHYWGLRVRGQHTXT 473
R D+ERL I RG+RH G +RGQ T T
Sbjct: 75 RADIERLISISRYRGIRHQDGSPLRGQRTHT 105
>UniRef50_Q2AKW7 Cluster: Ribosomal protein S13; n=1; Bacillus
weihenstephanensis KBAB4|Rep: Ribosomal protein S13 -
Bacillus weihenstephanensis KBAB4
Length = 75
Score = 32.7 bits (71), Expect = 4.4
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +3
Query: 249 VEKIITIMSNPRQYKIPDWF---LNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAX 419
++K++ + PR+++ D L R +DI+D +L ++ +++RL +I +
Sbjct: 6 LKKLLQKLVFPRKHESRDLSEDELGRIRDIID---RIKVEGDLRREVSLNIKRLMEIGSY 62
Query: 420 RGMRHYWGLRVRG 458
RG+RH GL VRG
Sbjct: 63 RGLRHRRGLPVRG 75
>UniRef50_A6LXE0 Cluster: Putative uncharacterized protein
precursor; n=1; Clostridium beijerinckii NCIMB 8052|Rep:
Putative uncharacterized protein precursor - Clostridium
beijerinckii NCIMB 8052
Length = 445
Score = 32.7 bits (71), Expect = 4.4
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +3
Query: 165 VGRRYSNIVLKKADIDLDKRAGECTEEEVE----KIITIMSNPRQYKIPDWFLNRXKDIV 332
V +RY+ I+LKK DID K E +++ K+ ++ P Q + LN+ +D +
Sbjct: 148 VTKRYNAIILKKIDIDKLKTGLEIKNNDLDALKIKVSVGLAIPNQLEDKQIELNKAQDEI 207
Query: 333 DGKYSQLTSSNLD 371
K + L +NLD
Sbjct: 208 KAKENSL-KNNLD 219
>UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=4;
Magnoliophyta|Rep: Mitochondrial ribosomal protein S13 -
Oenothera bertiana (Bertero's evening primrose)
Length = 114
Score = 32.7 bits (71), Expect = 4.4
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 381 REDLERLKKIXAXRGMRHYWGLRVRGQHTXT 473
R D+ER I RG+RH GL +RGQ + T
Sbjct: 73 RADIERFISISCYRGIRHQDGLPLRGQRSHT 103
>UniRef50_A7S3C9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 270
Score = 32.3 bits (70), Expect = 5.8
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 231 ECTEEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTS--SNLDSKLREDLERLK 404
E TE V K + I N + Y+ DW LN V+G + D KL LER K
Sbjct: 31 ELTETPVRKAMFIQVN-QTYEETDWILNLPD--VNGTLEGIVGWVDLQDPKLESILERYK 87
Query: 405 KIXAXRGMRH 434
K RG+R+
Sbjct: 88 KFPKFRGVRN 97
>UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast
precursor; n=6; cellular organisms|Rep: 30S ribosomal
protein S13, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 169
Score = 32.3 bits (70), Expect = 5.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 390 LERLKKIXAXRGMRHYWGLRVRGQHT 467
++RLK+I RG+RH GL RGQ T
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQRT 147
>UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus
laevis|Rep: LOC100037042 protein - Xenopus laevis
(African clawed frog)
Length = 384
Score = 31.9 bits (69), Expect = 7.7
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 261 ITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLK 404
+ I ++ KIPD LN + V +S+ + N +S+L+ D +R+K
Sbjct: 6 VGIHKEEQEQKIPDPLLNGDAEDVPQHFSETPTCNTESRLQADQQRIK 53
>UniRef50_Q7RQE1 Cluster: Protein factor associated with
neutral-sphingomyelinase activation; n=3; Plasmodium
(Vinckeia)|Rep: Protein factor associated with
neutral-sphingomyelinase activation - Plasmodium yoelii
yoelii
Length = 1490
Score = 31.9 bits (69), Expect = 7.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 209 NVGFFENNVGVPPANTFDSRHRKHNL 132
N+ F NN PP NTF+ ++K+N+
Sbjct: 1189 NLSQFSNNCATPPINTFEKENQKYNV 1214
>UniRef50_Q4JR61 Cluster: Putative uncharacterized protein; n=1;
Babesia sp. WA1|Rep: Putative uncharacterized protein -
Babesia sp. WA1
Length = 954
Score = 31.9 bits (69), Expect = 7.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 231 ECTEEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDL 392
E TE+ + ++ PR YK WF NR ++ + ++ +T L + + D+
Sbjct: 163 ESTEDAIPPKFNVLCMPRSYKALKWFANRGINMDNEEFGSVTYDFLKNYIPPDI 216
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,291,607
Number of Sequences: 1657284
Number of extensions: 8454021
Number of successful extensions: 24479
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 23937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24466
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -