Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25c19
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   220   8e-59
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   220   8e-59
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    34   0.013
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    26   2.6  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   4.5  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   4.5  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.9  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   7.8  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  220 bits (538), Expect = 8e-59
 Identities = 103/140 (73%), Positives = 118/140 (84%)
 Frame = +3

Query: 60  MSLVIPDXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 240 EEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAX 419
            EE+E+I+TI+ NP Q+KIP WFLNR KDI DGK  QL ++N+DSKLREDLERLKKI   
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 420 RGMRHYWGLRVRGQHTXTTG 479
           RG+RH   LRVRGQHT TTG
Sbjct: 121 RGLRHALDLRVRGQHTKTTG 140


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  220 bits (538), Expect = 8e-59
 Identities = 103/140 (73%), Positives = 118/140 (84%)
 Frame = +3

Query: 60  MSLVIPDXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 240 EEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAX 419
            EE+E+I+TI+ NP Q+KIP WFLNR KDI DGK  QL ++N+DSKLREDLERLKKI   
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 420 RGMRHYWGLRVRGQHTXTTG 479
           RG+RH   LRVRGQHT TTG
Sbjct: 121 RGLRHALDLRVRGQHTKTTG 140


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 33.9 bits (74), Expect = 0.013
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +3

Query: 387 DLERLKKIXAXRGMRHYWGLRVRGQHTXT 473
           D+ RL  I   RGMRH  GL V GQ+T T
Sbjct: 76  DISRLVNIRCYRGMRHVNGLPVNGQNTRT 104


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 272 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 162
           +++D  F+ F C F+     +  G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 123 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 215
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 390 NLHGVLNPSWRRSAGCIYHQQYPXAYLGTSLVSY 289
           N H  ++PS R S+  +Y    P  Y  ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 289 YCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 170
           YC  F  +  +   +  V+SP  ++  M+ F+R +L YL+
Sbjct: 58  YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 267 IMSNPRQYKIPDWFLNRXKDIVDGKYSQ 350
           +  NPR + + ++ L     IV+ K+SQ
Sbjct: 583 LFRNPRNHLLLEYLLQAISSIVENKFSQ 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,619
Number of Sequences: 5004
Number of extensions: 36344
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)