Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25c19
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 217 4e-57
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 206 7e-54
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 204 2e-53
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 89 1e-18
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 36 0.017
03_01_0404 + 3138624-3140096 32 0.28
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 3.4
03_01_0646 + 4742398-4742994,4743681-4744085 27 6.0
03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084 27 7.9
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 27 7.9
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116... 27 7.9
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 217 bits (530), Expect = 4e-57
Identities = 92/134 (68%), Positives = 119/134 (88%)
Frame = +3
Query: 78 DXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 257
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 258 IITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHY 437
++T+++NPRQ+K+PDWFLNR KD DG++SQ+ S+ LD KLR+DLERLKKI RG+RHY
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 438 WGLRVRGQHTXTTG 479
WGLRVRGQHT TTG
Sbjct: 123 WGLRVRGQHTKTTG 136
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 206 bits (503), Expect = 7e-54
Identities = 96/156 (61%), Positives = 123/156 (78%), Gaps = 16/156 (10%)
Frame = +3
Query: 60 MSLVIPDXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 224
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 225 -----------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLD 371
AGE T EE+E+++T+++NPRQ+K+PDWFLNR KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 372 SKLREDLERLKKIXAXRGMRHYWGLRVRGQHTXTTG 479
KLR+DLERLKKI RG+RHYWGLRVRGQHT TTG
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTG 156
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 204 bits (499), Expect = 2e-53
Identities = 96/158 (60%), Positives = 123/158 (77%), Gaps = 18/158 (11%)
Frame = +3
Query: 60 MSLVIPDXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 224
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 225 -------------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSN 365
AGE T EE+E+++T+++NPRQ+K+PDWFLNR KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 366 LDSKLREDLERLKKIXAXRGMRHYWGLRVRGQHTXTTG 479
LD KLR+DLERLKKI RG+RHYWGLRVRGQHT TTG
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTG 158
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 89.4 bits (212), Expect = 1e-18
Identities = 41/60 (68%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Frame = +3
Query: 303 WFL-NRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAXRGMRHYWGLRVRGQHTXTTG 479
W L R KD DG++SQ+ S+ LD KLR+DLERLKKI RG+RHYWGLRVRGQHT TTG
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTG 66
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 35.9 bits (79), Expect = 0.017
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +3
Query: 381 REDLERLKKIXAXRGMRHYWGLRVRGQHT 467
R +ERLK+I RG+RH GL VRGQ T
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQRT 136
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.9 bits (69), Expect = 0.28
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 333 DGKYSQLTSSNLDSKLREDLERLKKIXAXRGMR 431
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 205 SAFLRTMLEYLRPTPLIAVIANITL 131
S+FL TM EY+R P A +AN T+
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 143 CDDGYQRCWPEVLQHCSQKSR 205
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
>03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084
Length = 156
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 313 FRNQSGILYCLGFDMIVIIFSTSSSVHSPARLS 215
F N YCLG +I ++++T+ RLS
Sbjct: 40 FDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLS 72
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +3
Query: 201 ADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDS-- 374
+ +DLD R+G T V K T+ NP + ++ + + KD Y +LT+ N ++
Sbjct: 190 SSVDLDIRSGSNTRHVVLKRQTVTLNPVRSRMCE--IPGAKDNSKVGYIKLTTFNQNAAG 247
Query: 375 KLREDLERLKK 407
++E L++L++
Sbjct: 248 SVKEALQKLRE 258
>02_05_0030 +
25209067-25209130,25209231-25209400,25210482-25211668,
25211695-25212011,25212669-25213374,25214248-25215448
Length = 1214
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 151 VIANITLRLPSMFVFMIRRIC*NXSGMTSDILXKFLTNVPKHNTG 17
+IANI RLP + R +C +TS+ L TN+ + N G
Sbjct: 823 IIANILTRLPPKELVRARVVCKQWHALTSEHLFMH-TNLLRTNAG 866
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,513,205
Number of Sequences: 37544
Number of extensions: 233588
Number of successful extensions: 629
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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