Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25c19
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)              245   1e-65
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   8e-11
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)                 28   4.6  
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    27   6.1  

>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score =  245 bits (600), Expect = 1e-65
 Identities = 109/140 (77%), Positives = 128/140 (91%)
 Frame = +3

Query: 60  MSLVIPDXFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLVIP+ FQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60

Query: 240 EEEVEKIITIMSNPRQYKIPDWFLNRXKDIVDGKYSQLTSSNLDSKLREDLERLKKIXAX 419
           E+EVE+++TIM NPRQYKIPDWFLNR KD  DGKYSQ+ ++ LD+K+REDLERLKKI A 
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAH 120

Query: 420 RGMRHYWGLRVRGQHTXTTG 479
           RG+RHYWGLRVRGQHT TTG
Sbjct: 121 RGLRHYWGLRVRGQHTKTTG 140


>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 63.7 bits (148), Expect = 8e-11
 Identities = 27/34 (79%), Positives = 33/34 (97%)
 Frame = +3

Query: 60  MSLVIPDXFQHILRIMNTNIDGKRKVMFAMTAIK 161
           MSLVIP+ FQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34


>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
          Length = 1104

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -2

Query: 250 TSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 140
           T +++HS  + ++++  F+ + +E  RPT L  ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862


>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 348 QLTSS--NLDSKLREDLERLKKIXAXRG 425
           QLTS   N+D K+RE LE++KK+    G
Sbjct: 72  QLTSEEDNVDPKIREGLEKIKKLDKILG 99


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 84  FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKII 263
           F+H ++     +  KRK +     +       +NI   K DIDL    G CTE+E+ +++
Sbjct: 60  FRHEVQASTRKVSSKRKPIRKRRTVT------ANISATKYDIDL---LGYCTEQEIRRVV 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,260,754
Number of Sequences: 59808
Number of extensions: 267820
Number of successful extensions: 791
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)