Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25c11
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 182 4e-47
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 117 2e-27
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 38 0.002
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 37 0.002
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 37 0.003
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 36 0.005
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 36 0.005
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 35 0.009
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 35 0.012
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 33 0.027
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 33 0.036
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 32 0.063
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 32 0.084
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 31 0.11
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 31 0.15
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 31 0.19
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 30 0.26
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 30 0.34
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 30 0.34
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 29 0.45
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 29 0.59
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 29 0.59
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.0
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 28 1.0
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 28 1.4
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 1.8
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 2.4
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 27 2.4
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 27 3.1
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 27 3.1
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 27 3.1
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 4.2
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 4.2
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 26 4.2
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 26 4.2
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 4.2
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 26 4.2
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 26 5.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.5
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 7.3
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 25 7.3
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 7.3
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 9.6
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 182 bits (443), Expect = 4e-47
Identities = 90/165 (54%), Positives = 118/165 (71%)
Frame = +2
Query: 161 ITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREGKIAGRAVLL 340
++++ERIGAHSHI+G+GL+D+LEP++ SQGMVGQ AR+AAGVIL+MI+EG+IAGRA+L+
Sbjct: 11 VSKLERIGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAAGVILKMIQEGRIAGRAILM 70
Query: 341 AGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIRXXXXXXXXXXX 520
AG P TGKTAIAMG+AQ+LG DTPF +++ SE++SLEMSKTEAL QA+R
Sbjct: 71 AGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQALR-KSIGVRIKEE 129
Query: 521 XXXXXXXXXXXXXXXXXXXXXXXXXLTLKTTDMETNYDMGAKMID 655
LT+++TDMET YD+G KMID
Sbjct: 130 TEIIEGEVVEVQIDRSITGGNKQGKLTIRSTDMETVYDLGTKMID 174
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 117 bits (281), Expect = 2e-27
Identities = 56/116 (48%), Positives = 74/116 (63%)
Frame = +2
Query: 140 QVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREGKI 319
Q+ EV+ R RI HSHI+GLGL + V G +GQ+ AR+A G+I +I+ K
Sbjct: 3 QISEVKGNGRDNRITTHSHIKGLGLKEDGTCESVGGGFIGQEKAREACGIITDLIKSKKF 62
Query: 320 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIR 487
G+ VL AG GTGKTA+A+ +AQ LGP PF M GSE++S E+ KTEAL + R
Sbjct: 63 GGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALMENFR 118
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 296 QMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 469
++ +G VLL G PGTGKT +A +A L + F S+ G E+ ++ + ++EA
Sbjct: 679 ELFSQGLKPRSGVLLYGPPGTGKTLLAKAVATELSLE--FVSIKGPELLNMYVGESEA 734
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +2
Query: 296 QMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALT 475
Q+ G+ +LL G PGTGK+ +A +A G + F S++ S++ S M ++E L
Sbjct: 153 QLFSHGRKPWSGILLYGPPGTGKSYLAKAVATEAG--STFFSISSSDLVSKWMGESERLV 210
Query: 476 QAI 484
+ +
Sbjct: 211 RQL 213
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 296 QMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 469
+ +R G + VL G PGTGKT +A +A + F S+ G E+ S+ ++E+
Sbjct: 522 KFLRFGVTPSKGVLFFGPPGTGKTLLAKAIANECSAN--FISVKGPELLSMWFGESES 577
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 469
R +L+ G PGTGKT +A +A G F + G EI S ++E+
Sbjct: 259 RGILMYGPPGTGKTLMARAVANETG--AFFFLINGPEIMSKMAGESES 304
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 305 REGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 448
R G R +L+G PGTGKT +A A A + PF S++GSE +
Sbjct: 323 RLGAKIPRGAILSGPPGTGKTLLAK--ATAGEANVPFLSVSGSEFLEM 368
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFS 445
R VLL G PG GKT +A LA LG PF S++ I S
Sbjct: 209 RGVLLHGPPGCGKTMLANALANELG--VPFISISAPSIVS 246
Score = 29.1 bits (62), Expect = 0.59
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 311 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 484
G A VLL G PG GKT +A +A F S+ G E+ + + ++E + +
Sbjct: 522 GISAPTGVLLWGPPGCGKTLLAKAVANE--SKANFISIRGPELLNKYVGESERAVRQV 577
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 35.1 bits (77), Expect = 0.009
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = +2
Query: 311 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 436
GK+ R VLL G PGTGKT +A +A + PF M+GS+
Sbjct: 297 GKLP-RGVLLTGPPGTGKTMLARAVAGE--ANVPFFFMSGSQ 335
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +2
Query: 335 LLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 469
+L G+PG GKT+IA GLA+ + D +++ ++ SL++ A
Sbjct: 206 VLIGEPGVGKTSIAEGLARRIIDDDVPANLSNCKLLSLDVGSLVA 250
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 33.5 bits (73), Expect = 0.027
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 484
R +LL G PGTGKT +A A A + F S++ S + S + ++E L +A+
Sbjct: 493 RGMLLFGPPGTGKTMLAR--AVATESRSVFFSISASSLTSKFLGESEKLVRAL 543
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 33.1 bits (72), Expect = 0.036
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 302 IREGKIAGRAVLLAGQPGTGKTAIAMGLAQALG 400
+R G + VLL G PGTGKT +A +A +LG
Sbjct: 159 LRVGIKPPKGVLLYGPPGTGKTLLARAVAASLG 191
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 32.3 bits (70), Expect = 0.063
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 439
+ +LL G PGTGKT +A +A D F ++GSE+
Sbjct: 180 KGILLYGPPGTGKTLLARAVAH--HTDCKFIRVSGSEL 215
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 31.9 bits (69), Expect = 0.084
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 484
+ +LL G PGTGKT +A A A F S++ S + S + +E L +A+
Sbjct: 413 QGMLLFGPPGTGKTMLAR--AVATEAKATFFSISASSLTSKYLGDSEKLVRAL 463
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 31.5 bits (68), Expect = 0.11
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +2
Query: 290 ILQMIREGKIAG----RAVLLAGQPGTGKTAIAMGLAQAL 397
+L+++ GK+ G + + L G PG GKT++ +A AL
Sbjct: 556 VLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIASAL 595
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 31.1 bits (67), Expect = 0.15
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTE 466
+ +LL G PGTGKT IA + + L P + G EI + + ++E
Sbjct: 305 KGILLYGPPGTGKTLIARQIGKMLNAREP-KIVNGPEILNKYVGQSE 350
Score = 29.5 bits (63), Expect = 0.45
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 329 AVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 436
+VLL+G +GKTA+A + ALG + PF + +E
Sbjct: 587 SVLLSGPIASGKTALAATI--ALGSEFPFVKLVSAE 620
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 436
R VLL G PGTGKT + +A + + F + GSE
Sbjct: 169 RGVLLYGPPGTGKTMLVKAVANSTAAN--FIRVVGSE 203
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 30.3 bits (65), Expect = 0.26
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 439
+ ++L G PGTGKT A +A D F + GSE+
Sbjct: 214 KGIMLYGPPGTGKTLCARAVANR--TDATFIRVIGSEL 249
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 29.9 bits (64), Expect = 0.34
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQA 394
R VL G PGTGKT +A LA A
Sbjct: 301 RGVLFHGPPGTGKTLMARALAAA 323
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 439
+ V+L G PGTGKT +A +A F + GSE+
Sbjct: 226 KGVILYGAPGTGKTLLAKAVANQ--TSATFLRVVGSEL 261
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 29.5 bits (63), Expect = 0.45
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 221 SLEPRQVSQGMVGQKMARKAAGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALG 400
SL S G+VG++ + + + AG A+ ++G PGTGKT + + +
Sbjct: 159 SLRKSYRSAGVVGRENEKSIVESFFRQHLDAN-AGGALYVSGAPGTGKTVLLHNVLDHVV 217
Query: 401 PDTP 412
D P
Sbjct: 218 SDYP 221
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 484
+ VLL G PG KT A +A G + F ++ G E+F + ++E + +
Sbjct: 583 KGVLLYGPPGCSKTITAKAIATETGLN--FIAVKGPELFDKFVGESERAVRQV 633
Score = 28.7 bits (61), Expect = 0.78
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 484
R VLL G PGTGKT + +A FT + G + + +TE+ + I
Sbjct: 314 RGVLLYGPPGTGKTMVMRAVAAEANAQV-FT-IDGPSVVGKYLGETESRLRKI 364
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 29.1 bits (62), Expect = 0.59
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 332 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTE 466
+LL G PG GKT +A ++ F S+ G E+ + K+E
Sbjct: 643 ILLFGYPGCGKTYLASAISSTF--PVQFISIKGPELLDKYIGKSE 685
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALG 400
+ +LL G PG GKT++ LA+ G
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETG 1584
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 317 IAGRAVLLAGQPGTGKTAIAMGLAQAL 397
+A VLL G G GKT + LA+ L
Sbjct: 1184 LAKEPVLLVGDTGCGKTTVCQILAECL 1210
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPD 406
+AVLL+G PG GKT A +A+ G D
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVAKLEGYD 436
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -1
Query: 453 ISKENISEPAMLVNGVSGPRACASPIAMAVFPVPG*PANNTARPAILPSRIICKMT 286
+ + NI E +V VS P+ S A P P PA+ + PS + + T
Sbjct: 57 VGEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAEST 112
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLA 388
R VL G PGTGKT +A LA
Sbjct: 407 RGVLFHGPPGTGKTLMARVLA 427
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 335 LLAGQPGTGKTAIAMGLAQAL 397
L+ G PGTGKT +G+ AL
Sbjct: 1149 LIQGPPGTGKTKTIIGIISAL 1169
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 332 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMS 457
VLL G PGT K+ + + L P +TS GS L S
Sbjct: 368 VLLLGDPGTAKSQF-LKFVERLAPIAVYTSGKGSSAAGLTAS 408
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMA 427
R LL G PG+GKT+ LA L D ++A
Sbjct: 243 RGYLLYGPPGSGKTSFLYALAGELDYDICVLNLA 276
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 3.1
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 134 AAQVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREG 313
A ++ E +T E + A S + L + L + G + A I+Q+ +
Sbjct: 2 ADEIMENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRA--IIQICK-- 57
Query: 314 KIAGRAVLLAGQPGTGKTA-IAMGLAQAL 397
GR V+ Q GTGKTA ++G+ Q++
Sbjct: 58 ---GRDVIAQAQSGTGKTATFSIGILQSI 83
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = +2
Query: 191 SHIRGLGLDDSLEPRQVSQGMVGQKMARKAAGVILQMIREGKIAGRAV------LLAGQP 352
S ++ + +D+ R G + +++ ++L M + K V L+ G P
Sbjct: 169 SRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPP 228
Query: 353 GTGKTAIAMGLA 388
GTGKT +A A
Sbjct: 229 GTGKTLLARACA 240
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 332 VLLAGQPGTGKTAIAMGLAQ 391
+++ G PGTGKT +A +A+
Sbjct: 11 IIICGTPGTGKTTLAEQVAE 30
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 541 DLPFNYLRLLLNSNTYRLPDGLR*SLSFTHFQREYLRTGHARKWCVRSQSLC*SHSDG 368
DLP L + + LP+ + SLS + R ++ +G AR + SL +DG
Sbjct: 339 DLPIETLNKHIETTNTHLPEDRKVSLSLVNGPRSFVVSGPARSLYGLNLSLRKEKADG 396
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 332 VLLAGQPGTGKTAIAMGLAQAL-GP 403
+L G PGTGKT+ + L++ L GP
Sbjct: 55 MLFYGSPGTGKTSTILALSRELFGP 79
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 137 AQVQEVRSITRIERIGAHSHIRGLGLDD 220
A +++V T I+ +G HSHIR + D
Sbjct: 252 ASIRKVHPNTPIQILGGHSHIRDFAVYD 279
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 239 VSQGMVGQKMARKAAGVILQMIREG-KIAGRAV---LLAGQPGTGKTAIAMGLAQAL 397
+ + ++GQ A KA +++ R G + R + L G G GKTA+ LA+ L
Sbjct: 500 IGKKIIGQDEALKAIADAVRLSRAGLQNTNRPLASFLFLGPTGVGKTALTKALAEFL 556
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 326 RAVLLAGQPGTGKTAIAMGLAQ 391
+ +LL G PG GKT +A LA+
Sbjct: 126 KGLLLYGPPGCGKTMLAKALAK 147
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -1
Query: 246 CDTCL-GSKESSKPSPLM---WECAPILSMRVIERTSCTC 139
CD+C S + SK S + W+ P + +ERTS TC
Sbjct: 223 CDSCFKSSPKHSKTSCIRTVDWKNPPTILQIQLERTSYTC 262
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 5.5
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +3
Query: 396 WDRTHHLRAWPV 431
W + HH+R WP+
Sbjct: 532 WSKDHHVRLWPI 543
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 335 LLAGQPGTGKTAIAMGLAQAL 397
L+ G PGTGKT +G+ A+
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAV 1310
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 332 VLLAGQPGTGKTAIAMGLAQA-LGP 403
++++G PG GKT + LA A LGP
Sbjct: 57 LVISGMPGIGKTTSILCLAHALLGP 81
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 137 AQVQEVRSITRIERIGAHSHIRGLGLDD 220
A +++V T I+ G HSHIR + D
Sbjct: 252 ASIRKVHPDTPIQIFGGHSHIRDFAVYD 279
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 228 SQDKYRRAWSARRWQGRPPESSYR*FEKV 314
SQD+Y R W+ W + S FE V
Sbjct: 213 SQDRYIRLWNISLWGSEDEKVSEEFFESV 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,685
Number of Sequences: 5004
Number of extensions: 43323
Number of successful extensions: 161
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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