Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25c07
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   3.2  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    23   5.6  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    23   5.6  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    23   5.6  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    23   7.4  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    22   9.7  

>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 87  QRINLFSLNLPSSIE*YQNLPPAEHSYNELPI 182
           Q+IN+  LN+ +S      L   E SYN L I
Sbjct: 102 QKINVLQLNINASDNSLAYLSKPEESYNFLTI 133


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 96  NLFSLNLPSSIE*YQNLPPAEHSYNELPILR 188
           +L  LNL S ++ +++LP    SY    +LR
Sbjct: 186 DLEDLNLQSIVQTFEDLPEGIQSYAFFQLLR 216


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 46  TDNREIYEPNEEII 5
           T NRE+ E NEEI+
Sbjct: 452 TTNREVEEENEEIL 465


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 180 LVVHYMNVLLVVNFDIIQLMMGDLKK 103
           LV   M +++V  +DII   + DLK+
Sbjct: 512 LVEFPMRIVVVTMYDIIVYFLSDLKR 537


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 84  NQRINLFSLNLPSSIE*YQNLPPAE--HSYNEL 176
           N+RI L  L  P+S + Y+ +P  E  H  N+L
Sbjct: 148 NRRIVLEKLANPNSSKEYETIPTVENRHPLNKL 180


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 108 LNLPSSIE*YQNLPPAEHSYNELP 179
           L +  SIE   + P  EH++N LP
Sbjct: 510 LGVAQSIEWLLHSPVHEHAFNTLP 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 559,074
Number of Sequences: 5004
Number of extensions: 6930
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)