Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25c02
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    38   0.007
AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical ...    34   0.12 
AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    33   0.21 

>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
 Frame = +1

Query: 379 VLTNDLKQVTFHPF-YSSGTAVVRGNCPMIHNYHYYWEIKMLTDTYGTDILIGVGSNKVN 555
           +   D  + TFH    +  T  +RG       +H  W+I+      GT  ++GV +    
Sbjct: 125 IFVKDEDKFTFHRHPVAQSTDCIRGKMGYSRGFHV-WQIEWPERQRGTHAVVGVATKNAP 183

Query: 556 ISDPQFTFTSLIGQDEESYGLSYT-GAVRHNSKVT 657
           +    +T  +LIG  +ESYG   T     H+SK T
Sbjct: 184 LHAAGYT--ALIGTTDESYGWDITRRECHHDSKHT 216


>AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.3 protein.
          Length = 243

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +1

Query: 379 VLTNDLKQVTF--HPFYSSGTAVVRGNCPMIHNYHYYWEIKMLTDTYGTDILIGVGSNKV 552
           ++  D  ++T   HP  +  T  +RG       +H  W+I+      GT  ++GV +   
Sbjct: 36  IIVKDQDKLTLYRHPVPNC-TDCIRGKMGYSRGFHV-WQIEWPERQRGTHAVVGVATKNA 93

Query: 553 NISDPQFTFTSLIGQDEESYG 615
            +   ++T  +L+G + ESYG
Sbjct: 94  PLQAAEYT--TLVGSNNESYG 112


>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +1

Query: 478 YYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGLSYTGA----VRHN 645
           +YWE+ +      +DI+IGV    VN +        ++G+D   + +   G     + + 
Sbjct: 637 HYWEVTIDRHDGNSDIVIGVAQPAVNRN-------VMLGKDLHGWSMYVDGERSWYLHNE 689

Query: 646 SKVTRDSVGFCRGTIIGVRVDLWNG 720
           +   R   G  RGT+IGVR+D   G
Sbjct: 690 THHNRVLGGVTRGTVIGVRLDCDRG 714


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,472,121
Number of Sequences: 27780
Number of extensions: 345096
Number of successful extensions: 962
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)