Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25c02
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 382 GRASWNRRTEASPNSILL 329
           G A W+  TE +PN+ +L
Sbjct: 320 GIACWDTNTELNPNTFIL 337


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 294 PKPLHMWRRTELKRMELGEASVRRFQ 371
           P PL+ W R++ +R + G  +  R+Q
Sbjct: 257 PSPLYPWMRSQFER-KRGRQTYTRYQ 281


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 532  GVGSNKVNISDPQFTFTSLIGQDEESYGLSY 624
            G GS   N+  P++   +    +E+ YG  Y
Sbjct: 1794 GGGSGTHNVFSPEYDDPANCAPEEDQYGSQY 1824


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 472 SYESLGSFPGPLQYPNYRMDE 410
           +Y ++ SFP  L  P+ ++DE
Sbjct: 379 NYLTVHSFPSTLNIPSVKIDE 399


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 334 EWSWERPPYVGSSWLVLTNDLKQVTFHPFYSS 429
           +W W  PP  GS+  V   ++      P Y +
Sbjct: 386 DWLWIVPPISGSATPVFHQEMALYYLKPSYDA 417


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/46 (15%), Positives = 18/46 (39%)
 Frame = +1

Query: 334 EWSWERPPYVGSSWLVLTNDLKQVTFHPFYSSGTAVVRGNCPMIHN 471
           E  W R  ++ + W +       +  H F+ +   +     P +++
Sbjct: 154 ECKWSRKGFLRTRWSISGTVFDLINIHLFHDASNFIAMETFPSVYS 199


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +1

Query: 547 KVNISDPQFTFTSLIGQDEESYGLSYTGAVRHNSKVTRDSVGF 675
           K+N+S+  + +  +    +  + L Y G V    K    +V F
Sbjct: 552 KINVSEDAYRYLCMPENQDSQFLLEYRGPVTMKGKSEPMNVWF 594


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +1

Query: 547 KVNISDPQFTFTSLIGQDEESYGLSYTGAVRHNSKVTRDSVGF 675
           K+N+S+  + +  +    +  + L Y G V    K    +V F
Sbjct: 552 KINVSEDAYRYLCMPENQDSQFLLEYRGPVTMKGKSEPMNVWF 594


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,892
Number of Sequences: 438
Number of extensions: 4415
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)