Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25c01
         (662 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot...    33   1.2  
AF007194-1|AAC02272.1|  957|Homo sapiens mucin protein.                33   1.2  
AB038784-1|BAB12118.1|  877|Homo sapiens intestinal mucin protein.     33   1.2  
AB038782-1|BAB12116.1|  878|Homo sapiens intestinal mucin protein.     33   1.2  
AF229178-1|AAF69491.1|  753|Homo sapiens leucine rich repeat and...    30   8.5  

>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
           protein.
          Length = 1217

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 330 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSITFCMHSL 172
           P+++ S +++      T T P  T + G   S A  +  FG+T S T  +H+L
Sbjct: 456 PISSFSTSIVVIPETPTQTPPVLTSATGTQTSPAPTTVTFGSTDSSTSTLHTL 508


>AF007194-1|AAC02272.1|  957|Homo sapiens mucin protein.
          Length = 957

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 330 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSITFCMHSL 172
           P+++ S +++      T T P  T + G   S A  +  FG+T S T  +H+L
Sbjct: 456 PISSFSTSIVVIPETPTQTPPVLTSATGTQTSPAPTTVTFGSTDSSTSTLHTL 508


>AB038784-1|BAB12118.1|  877|Homo sapiens intestinal mucin protein.
          Length = 877

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 330 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSITFCMHSL 172
           P+++ S +++      T T P  T + G   S A  +  FG+T S T  +H+L
Sbjct: 116 PISSFSTSIVVIPETPTQTPPVLTSATGTQTSPAPTTVTFGSTDSSTSTLHTL 168


>AB038782-1|BAB12116.1|  878|Homo sapiens intestinal mucin protein.
          Length = 878

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 330 PVTTVSVNVIFSAGLLTSTVPSWTGSRGAIPSSAMPSANFGATTSITFCMHSL 172
           P+++ S +++      T T P  T + G   S A  +  FG+T S T  +H+L
Sbjct: 116 PISSFSTSIVVIPETPTQTPPVLTSATGTQTSPAPTTVTFGSTDSSTSTLHTL 168


>AF229178-1|AAF69491.1|  753|Homo sapiens leucine rich repeat and
           death domain containing protein protein.
          Length = 753

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 176 ECIQKVIEVVAPKFADGIAELGIAPLDPVQLGT 274
           E ++ V+E+   K+ D I  +G+AP DPV  G+
Sbjct: 710 EEVRAVLELGRRKYQDSIRRMGLAPKDPVLPGS 742


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,638,244
Number of Sequences: 237096
Number of extensions: 1992500
Number of successful extensions: 4327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4327
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)