Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25c01
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    74   1e-15
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    29   0.030
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.0  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   7.9  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 73.7 bits (173), Expect = 1e-15
 Identities = 57/214 (26%), Positives = 104/214 (48%), Gaps = 12/214 (5%)
 Frame = +2

Query: 56  INRITMIVWCLMAVVAATEVSAGNLPSFISPCSASDPN--LNECIQKVIEVVAPKFADGI 229
           + RIT+I + ++  +    ++   LP+    C  S P    N+CI + +       A G+
Sbjct: 1   MGRITIIRFFVLTTMLMMAIAV-ELPNNWRICDRSLPQKEYNQCIAEAVRDAVVSLAGGL 59

Query: 230 AELGIAPLDPVQLGTVEVNNPALKIT----FTDTVVTGL-RGSKINSYKINLDKGKATID 394
               I P++P+ + +V++      +T    + +  + GL +  +I +Y I+ DK   + +
Sbjct: 60  KSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSE 119

Query: 395 -FTANVTLKAHYVMDGQVLILPIRGNGPAKIKITNLRIV--VTYDFTTVAGHWVLTGYKD 565
            +   V   A Y ++G+VL+LP+RG G + I + +L+    +  +     G   L   K 
Sbjct: 120 SYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIYCEKYEKNGETYLRIKKH 179

Query: 566 HYKMDRAQFK--FNNLFGGNKELAQTTEKFTNQN 661
             K + A+ K  F NLF GNKEL +   +F N+N
Sbjct: 180 AVKFNPAKVKLRFENLFDGNKELGEQMNRFINEN 213


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 297 SAGLLTSTVPSWTGSRGAIPSSAMPSANFGATT 199
           SA  +TST PS+ G   + PS + PS+ F + +
Sbjct: 72  SAAAITSTSPSYPGGGSSSPSPSSPSSFFSSVS 104


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 169 PQRMHTKSDRSGGSKVR*WHC*AGN 243
           PQR+HT   R G  K R      GN
Sbjct: 40  PQRIHTVRTRGGNKKYRALRLDTGN 64


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 520 LHDSRGPLGADRLQGPLQNGPS 585
           L D R P G   +QG  +N  S
Sbjct: 25  LFDKRAPTGHQEMQGKEKNSAS 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,865
Number of Sequences: 438
Number of extensions: 3237
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)