Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25b22
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   184   7e-48

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  184 bits (448), Expect = 7e-48
 Identities = 91/177 (51%), Positives = 116/177 (65%), Gaps = 1/177 (0%)
 Frame = +2

Query: 5   ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKET 184
           +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII      K  
Sbjct: 215 MLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPI 273

Query: 185 FXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATI 364
           F                 +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+
Sbjct: 274 FGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATL 333

Query: 365 HGTQINYN-PNIL*RXXXXXXXXXXXXXXXILANSSIDITLHDTYYVVXHFHYVLSI 532
            G  I ++   +L                 IL+NS +DI  HDTY+VV HFHYVLS+
Sbjct: 334 TGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSM 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,745
Number of Sequences: 5004
Number of extensions: 23471
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)