Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25b21
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z81130-1|CAB03413.1|  168|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF067609-9|AAP82661.1|  278|Caenorhabditis elegans Hypothetical ...    28   6.9  

>U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical
           protein T22F3.10 protein.
          Length = 417

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
 Frame = -3

Query: 308 ISYGISEN*L---LIMFSWNDHKFLLS-FSDIITFISRKL*ILVHNNRR--FSKFYY 156
           + +GI+E      L++FS+   +F+ + FSD   FIS KL I++ N     FS F++
Sbjct: 241 LKFGITETGFYVALVLFSYMPIRFVAAIFSDKFRFISEKLKIMIFNTFAVGFSGFFF 297


>Z81130-1|CAB03413.1|  168|Caenorhabditis elegans Hypothetical
           protein T23G11.1 protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
 Frame = -3

Query: 434 VYAFN*FVLIFLFYLIELQIQTTLSQFHYAHCMYYSP*TVTNISYGISEN*LLIMFSWND 255
           + AF    + +    I   I+TT+S FH A+  Y +P     +S  + +    ++ +  D
Sbjct: 63  ISAFTSVAVSYFVLAISFYIETTVSLFHLAYFSYRNP----AVSKDLIKTAFHLLKTSYD 118

Query: 254 HKFLLSFSDII-TFISRKL*ILVHNNRR 174
           +K LL+F++II T  +  +  + H N++
Sbjct: 119 NK-LLTFAEIIETTQNSMIKPMAHQNKQ 145


>AF067609-9|AAP82661.1|  278|Caenorhabditis elegans Hypothetical
           protein C23H5.2 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 233 KSLVRIYGHSMKTLLEVSFQKSR-TKYWLPFRGYNTYNVHNEIDLMSFEFAALLNKIKKL 409
           K L +   H+   + E+ F +S  T+   PF  +NT     EI+  +  F  +L  + K 
Sbjct: 20  KVLDKNLNHTAYNIFEMIFNQSPDTRQLFPFMKFNTGGRSKEIEFHALRFMQVLESVVKT 79

Query: 410 I 412
           +
Sbjct: 80  L 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,930,921
Number of Sequences: 27780
Number of extensions: 243940
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)