Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25b20
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   2.4  
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    25   3.2  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   3.2  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   4.3  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    24   5.6  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    24   7.5  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   7.5  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    23   9.8  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    23   9.8  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    23   9.8  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    23   9.8  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    23   9.8  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 205 ALKD--FDELDWTSLPDDVGSALLKWLYTDV 291
           A+KD  FDE  W  +PD   S +  W+  D+
Sbjct: 28  AVKDASFDERTWIWIPDSKESFVKAWIVEDL 58


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 335 FISCKAKESPLLKSTTSVYSHFNRADPTSS 246
           FI   A    L+K TTS  +H+ +AD   S
Sbjct: 119 FIYLAASRETLIKRTTSRKNHYMKADMVES 148


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +1

Query: 49  LSETSFVARLLMTVATLYGRETYSDIXIK-LQNKSXPGHKFVLNARSDDWNEEAL--KDF 219
           L E     RL ++   L  R+ Y  I  + L  K   GH  V+    +  +E  L  +DF
Sbjct: 750 LREIQVHMRLKVSANKLDLRQHYIPILYESLPVKLSTGHSDVVPEIIELMDEYYLNREDF 809

Query: 220 DELDWTSLPDDVGSALLKWLYT 285
           D +    LP D G  L+K + T
Sbjct: 810 DSITELVLPADAGEKLMKTIPT 831


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 106 RETYSDIXIKLQNKSXPGHKFVLNARS 186
           ++++SD+ I         HKF+L ARS
Sbjct: 615 KQSFSDVTIYCGTSMFHSHKFILCARS 641


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = +1

Query: 100 YGRETYSDIXIKLQNKSXPGHKFV----LNARSDDWNEEALKDFDELDWTSLPDD 252
           + +E  + +  +  + S  G+K      LN    DWN+    +  E   T +PD+
Sbjct: 590 FEKEKQATLPRRRSSSSMKGNKLAEDSYLNEAGFDWNQGTFHNGSEFGTTGVPDE 644


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 211 KDFDELDWTSLPDDVGSAL 267
           ++ DE+DW +   DV +AL
Sbjct: 611 RELDEIDWQAADQDVENAL 629


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 133 KLQNKSXPGHKFVLNARSDDWNEEALKDFDELDWTSLPDD 252
           +L+ +    HK   N   D   E A+ DF+E   T  P D
Sbjct: 28  ELKRQKTRDHKSFENLGRDQSRELAVSDFNEKQSTEPPKD 67


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 244 PDDVGSALLKWLYTDVVDLSRGDS 315
           P+D    L +WL TD +D    D+
Sbjct: 324 PEDEAEELQEWLNTDDLDQDESDA 347


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 268 LKWLYTDVVDLSRGDSFALQLM 333
           L  +Y  +VDL   DSF+L+L+
Sbjct: 369 LSLMYKSLVDLKTIDSFSLKLL 390


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +1

Query: 187 DDWNEEALKDFDELDWTSLPDDVGSALLKWLYTD 288
           D+   E  + +    W  +P+D+    +  LYTD
Sbjct: 640 DEGYIETYERYVPKSWMKVPEDITRCFVSLLYTD 673


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 334 SSVVKQKSLLYLNQQHLCTAISIGLTLHHLVE 239
           SS+V  + L +LN+ +L  AIS    L  L+E
Sbjct: 337 SSIVAFEKLYFLNKNYLRRAISDVNRLDELIE 368


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +1

Query: 97  LYGRETYSDIXIKLQNKSXPGHKFVLNARSDDWNEEALKDFDELDWTSLPDDVGSALLKW 276
           L  + T  +  +    KS P   FV++   D+    ALKD   +  + LP D    L+ +
Sbjct: 104 LLSQSTTMEYVLSKPVKSPPVFLFVMDTAVDESELTALKDAVIVSLSLLPPDAIVGLITY 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,109,331
Number of Sequences: 5004
Number of extensions: 16026
Number of successful extensions: 47
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)