Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25b14
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    27   3.5  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   4.6  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   4.6  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   6.0  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.0  

>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 6   NLKLQNIPKECRFQKFNTNTRNKLNYLDSTK 98
           NL+   +P   RF   + NT    NYL S K
Sbjct: 311 NLRQDGVPPILRFNSLSINTNVARNYLSSEK 341


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 527 SVRYADAHHIEQYRVSA--DIDI*ISCGAISDSTILLRCID 643
           S+RY D H++E+ RV +     + ++   +   T   +CID
Sbjct: 175 SLRYTDTHYLERERVMSIKSTPLTLAVSDMKGKTFAFQCID 215


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 33  ECRFQKFNTNTRNKLNYLDSTKNGKMCTLKIKHKI--LLSIYKH 158
           +C F    TN     NY  + K     ++KI+H +  +L I+ H
Sbjct: 819 QCFFYVLQTNEMYLANYFQALKTEGTSSVKIRHAVYLVLQIFGH 862


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 569 VSADIDI*ISCGAISDSTILLRCIDI 646
           VSA +DI + C   +D++I LR +D+
Sbjct: 325 VSAQLDIILKCLVDTDTSIRLRALDL 350


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 425 NIAHIHESVRYADAHHIEQYRVS 493
           NI H+ +   Y+D  H +Q RVS
Sbjct: 216 NIEHVKDETLYSDLEHGKQSRVS 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,147
Number of Sequences: 5004
Number of extensions: 61824
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)