Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25b14
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0162 + 15245354-15245458,15245558-15245629,15245793-152466...    29   4.8  
06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615...    28   6.3  

>09_04_0162 +
           15245354-15245458,15245558-15245629,15245793-15246617,
           15247787-15248474,15248805-15248821
          Length = 568

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 512 ISIHESVRYADAHHIEQYRVSADIDI*ISCGAISDSTILLRCIDIESIYDLYHPLLVRGD 691
           +++H  V   D  + E  + SAD+D   +   +  ST+ L+   +E IY+      +  D
Sbjct: 107 VAVHPLVASLDMLYDEMQKSSADVD---NQAEMCRSTVQLKASSVEVIYNEMQTQTIEAD 163

Query: 692 RC 697
            C
Sbjct: 164 AC 165


>06_02_0369 -
           15260013-15260273,15260367-15260516,15261518-15261577,
           15262114-15262241,15262559-15262654,15262655-15263039
          Length = 359

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = -3

Query: 660 SYIDSISIHRSNIVESDIAPHEIYISISADTRYCSM*CASAYRTDS*IEIYISISADTRY 481
           SYI + +++++N+   D+ P  I  + +   + C    A    TD+   ++ +    TR+
Sbjct: 151 SYITTFTLNQANVYHRDLKPKNILANANCKLKICDFGLARVAFTDAPTTVFWTDYVATRW 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,346,845
Number of Sequences: 37544
Number of extensions: 324880
Number of successful extensions: 657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)