Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25b14
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical pr... 33 0.20
AL117193-10|CAB60304.1| 337|Caenorhabditis elegans Hypothetical... 31 0.80
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 29 2.4
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 29 2.4
AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical ... 29 2.4
Z72508-7|CAA96642.1| 336|Caenorhabditis elegans Hypothetical pr... 29 4.3
U61947-5|AAB03134.1| 723|Caenorhabditis elegans Hypothetical pr... 28 7.5
U88168-2|AAC24398.1| 108|Caenorhabditis elegans Hypothetical pr... 27 9.9
>Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical
protein F32H2.1b protein.
Length = 928
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = -2
Query: 550 MRIGISYRFVNRNLYIDI--SRYTILLDVMRIGITYRFVNMSNIRLVR-IESARVSERTI 380
M IG+S N Y + +ILL+ MR+GI + RLVR + R +
Sbjct: 770 MHIGLSDEVTNSKEYANFYARMRSILLEPMRLGIARESSSDETKRLVRCLAEERACDEEQ 829
Query: 379 RISCDE*NRKR 347
+++CD+ R+R
Sbjct: 830 QVTCDQIRRRR 840
>Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical
protein F32H2.1a protein.
Length = 944
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = -2
Query: 550 MRIGISYRFVNRNLYIDI--SRYTILLDVMRIGITYRFVNMSNIRLVR-IESARVSERTI 380
M IG+S N Y + +ILL+ MR+GI + RLVR + R +
Sbjct: 770 MHIGLSDEVTNSKEYANFYARMRSILLEPMRLGIARESSSDETKRLVRCLAEERACDEEQ 829
Query: 379 RISCDE*NRKR 347
+++CD+ R+R
Sbjct: 830 QVTCDQIRRRR 840
>AL117193-10|CAB60304.1| 337|Caenorhabditis elegans Hypothetical
protein Y105C5A.17 protein.
Length = 337
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = -2
Query: 562 LLDVMRIGISYRFVNRNLYIDISRYTILLDVMR--IGITYRFVNMSNIRLVRIESARVSE 389
+L V+ I + + L+I I + ++ R I I++ + ++ N+ L ++ VS
Sbjct: 245 VLSVIYINVFRKLFQYFLHISILKQIANENMFRPIIAISHAY-SVQNMILQNTVNSTVSS 303
Query: 388 RTIRISCDE*NRKRHYPYNCK 326
++ +I C++ R+ P+NCK
Sbjct: 304 KSNKIMCEKTQMLRNLPFNCK 324
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 355 CFIHHMISLSCAHSLWPIRYEPNEYCSYSRIGTLCR 462
C+ ++ S C H+ WP + CS++RI TLC+
Sbjct: 1262 CYTYYC-SRECRHNNWP---NHSGRCSFARINTLCK 1293
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 355 CFIHHMISLSCAHSLWPIRYEPNEYCSYSRIGTLCR 462
C+ ++ S C H+ WP + CS++RI TLC+
Sbjct: 1303 CYTYYC-SRECRHNNWP---NHSGRCSFARINTLCK 1334
>AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical
protein F54E2.5 protein.
Length = 710
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -2
Query: 673 WVI*IVYRFNIYTSQ-QYR*IRYRPARNLYIDISRYTILLDVMRI--GISYRFVNRNLYI 503
WV+ ++ + TS +YR + P L ++ T L+ + GI F+N LY+
Sbjct: 154 WVLALIVEIILMTSNCKYRHDKKTPVYQLKCEVKGQTNLVVNKSLPGGIQLVFMNIILYL 213
Query: 502 DISRYTILLDVMRIGI 455
I Y + ++++IGI
Sbjct: 214 KIQTYFQIENIVQIGI 229
>Z72508-7|CAA96642.1| 336|Caenorhabditis elegans Hypothetical
protein F28H7.11 protein.
Length = 336
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +3
Query: 345 CLFLFHSSHDILIVRSLTLADSIRTKRILLIFTNRYVM-PMRITSSNIVYRLISIYRFRF 521
C+F + + I + S R LL F Y+ I ++ +YR ++++ F
Sbjct: 64 CIFNYRYAFTIFVADGYFETPS-EFGRYLLGFRCSYITGTYAILHAHFLYRYMTLFCHNF 122
Query: 522 TNRYDMPMRITSSNIVY--RLISIYRFRAG 605
RY +P I S ++Y L+S++ F AG
Sbjct: 123 LERYFLPHGIVVS-VIYCLGLMSLWTFIAG 151
>U61947-5|AAB03134.1| 723|Caenorhabditis elegans Hypothetical
protein C06G3.4 protein.
Length = 723
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 78 NYLDSTKNGKMCTLKIKHKILLSIYK 155
N +DS KN KM TL HK ++ + K
Sbjct: 676 NNMDSNKNDKMFTLMTYHKFIIFMLK 701
>U88168-2|AAC24398.1| 108|Caenorhabditis elegans Hypothetical
protein K11H12.1 protein.
Length = 108
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 536 IVPIRESKSIYRYQPIHDIARCDAHRHNVP 447
+ + + K +QP H C++H HNVP
Sbjct: 9 VARLLKEKLFAAFQPKHLEVECESHLHNVP 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,398,885
Number of Sequences: 27780
Number of extensions: 332331
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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