Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25b08
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    30   0.40 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.53 
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    28   1.2  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   2.1  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   6.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.6  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   8.6  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +3

Query: 102 DQIEMALDDIIKANK---KTRIGGGAGRKFDANKRTGRGGGAGFRSNRSG--GVQRGRNR 266
           D++ ++ D +I  ++   K +  G    K   N   GRGG  GFR  R G  G   G +R
Sbjct: 100 DKVYLSGDKLIPLDRFLPKPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSR 159

Query: 267 GG 272
           GG
Sbjct: 160 GG 161



 Score = 28.7 bits (61), Expect = 0.92
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +3

Query: 162 GGAGRKFDANKRTGRGGGA--GFRSNRSGGVQ---RGRNRGG 272
           GG+   F  N R G GGG+  GF     GG +   RG +RGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 162 GGAGRKFDANKRTGRGGG-AGFRSNRSGGVQRGRNRGG 272
           G AGR      R GRGG   GF  N  GG   G +RGG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGF-GGGSRGG 169


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +3

Query: 165 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 272
           G GR      R GRGG  G R   SGG  RG  +GG
Sbjct: 37  GGGRGGARGGRGGRGGARGGRGGSSGG--RGGAKGG 70



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 153 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQ 251
           R G   GR      R GRGG +G R    GG +
Sbjct: 40  RGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 141 NKKTRIGGGAGRK--FDANKRTGRGGGAGFRSNRSGGVQR 254
           N+    GGG GR+  +   +  G   G G+R+NR  G  R
Sbjct: 78  NRGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQWR 117



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 171 GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 272
           G + + N+    GGG G ++N  GG + G + GG
Sbjct: 72  GGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGG 105


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = +3

Query: 153 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSR 299
           R GGG+        R G GG  GF      G  RGR RGG  +S N +R
Sbjct: 444 RTGGGS-----RGGRGGFGGRGGFGGRGGFGGGRGRGRGG-ARSGNPNR 486


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = +1

Query: 436 TLIQIKTLILFVSDLFST*NHNPSNHIVISINVFVLHCLPT 558
           TLIQ KT ILF+S   S    +PS   +I+I V V + L T
Sbjct: 269 TLIQ-KT-ILFISSYTSPNPESPSRGFIIAILVLVANFLQT 307


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 497 IIPATILLSPSTFLFCIVYLHL 562
           ++P  +LL PS  +F ++ LHL
Sbjct: 252 VLPQVLLLCPSISIFNLILLHL 273


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 102 DQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRS 239
           D+ + A DD+ K N+     G    +  A   TG    +  R+N S
Sbjct: 603 DETDAAKDDLFKVNESIETNGHENFQKQALTSTGEQSSSNSRANPS 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,011
Number of Sequences: 5004
Number of extensions: 65517
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)