Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25b08
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.56 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.56 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.3  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   5.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.0  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 704 WSPFIYFSTPEVNSINWSKLH 642
           W  F+    P VNS+ W +L+
Sbjct: 496 WVSFVNNGVPNVNSVQWPRLN 516


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 704 WSPFIYFSTPEVNSINWSKLH 642
           W  F+    P VNS+ W +L+
Sbjct: 496 WVSFVNNGVPNVNSVQWPRLN 516


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 182 KFSSSTTSNPCL 147
           KF  S TSNPCL
Sbjct: 97  KFECSKTSNPCL 108


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/48 (20%), Positives = 22/48 (45%)
 Frame = +1

Query: 115 WHWMIL*KPTKRQGLEVVLEENLMQTKEQDVEAVLDFVATALVVYNEV 258
           W+W  L +P    G    L+ ++ + +EQ    +       +V +N++
Sbjct: 26  WNWNTLLRPNFLDGWYQTLQTHMKKVREQMAGILSRIPEQGVVNWNKI 73


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -1

Query: 309 LELPSNSW*ISLCLHDFYLVV 247
           L  PSN + ++L + DF++++
Sbjct: 79  LRTPSNMFVVNLAICDFFMMI 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,289
Number of Sequences: 438
Number of extensions: 4794
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)