Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25b07
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit Arc4|... 231 5e-62
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 27 2.5
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 27 3.3
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 3.3
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 4.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 5.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 5.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 5.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 5.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 5.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 5.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 5.8
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 26 5.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 5.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 5.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 7.6
>SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit
Arc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 231 bits (566), Expect = 5e-62
Identities = 109/168 (64%), Positives = 138/168 (82%)
Frame = +1
Query: 64 MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 243
M+ TL+PYL AVR TLTA++ LE FSS++VE+ ++PEVEV S E+LL P+V+SRN E+
Sbjct: 1 MSNTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQ 60
Query: 244 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITN 423
LIESS+NS+R SI IKQ DEIE+IL +KFM+F+M RAE+F +LRRKPV GY ISFLITN
Sbjct: 61 CLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITN 120
Query: 424 FHTEQMYKHKLVDFVIYFMEEIDKEISEMKLAVNARARICSEEFLKRF 567
+HTE+M KHKLVDF+I FMEE+D EISEMKL +N RAR+ +E +L F
Sbjct: 121 YHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF 168
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = +1
Query: 292 KQADEIEKILCKKFMRFMMMRAENF--------IVLRRKPVDGYHISFLITNFHTEQMY 444
K+ D + IL +K + +M AE+ VL +K V + S + NFH +QM+
Sbjct: 500 KEGDIMSGILIQKDANYKLMSAEDLRDFSDLTTTVLTQKQVIPFFSSMELANFHLKQMF 558
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 360 FSSHHHEPHKFFTKNFLYLIRLL 292
F+ H+HE +F K FLY+ + +
Sbjct: 353 FNEHYHEVMEFIEKLFLYIFKTI 375
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 469 IYFMEEIDKEISEMKLAVNARARICSEEFLKRF*LLLS 582
++F E+ D+E+ + +AV+ + I SE++ R +LS
Sbjct: 2014 VFFAEDRDEELIQPDVAVDPKLDITSEDYDDRIATILS 2051
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 342 EPHKFFTKNFLYLIRLLDHNT 280
E +KF T+NF ++ +LDH+T
Sbjct: 320 EKNKFKTENFKKVLEVLDHST 340
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 157 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 330
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 331 FMRFMMMRAE 360
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 157 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 330
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 331 FMRFMMMRAE 360
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 157 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 330
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 331 FMRFMMMRAE 360
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 157 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 330
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 331 FMRFMMMRAE 360
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 157 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 330
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 331 FMRFMMMRAE 360
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 157 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 330
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 331 FMRFMMMRAE 360
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 5.8
Identities = 19/81 (23%), Positives = 32/81 (39%)
Frame = +1
Query: 292 KQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKLVDFVI 471
+ A + I C F++ E L+++ DGY + NF E KL+ F
Sbjct: 1825 QSASQSSLIFCYNVYEFVVKEKETVAALKQQENDGYRSA---PNFFLEN--SKKLIRFTF 1879
Query: 472 YFMEEIDKEISEMKLAVNARA 534
+ + + E+ A N A
Sbjct: 1880 DVLRGVSNKHKELLTARNMAA 1900
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 157 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 330
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 331 FMRFMMMRAE 360
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 157 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 330
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 331 FMRFMMMRAE 360
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +1
Query: 403 ISFLITNFHTEQMYKHKLVDFVIYFMEEIDKEISEMKLAVNARARICSEEFLKR 564
I+F + H + H + + + + E + V A++C EEF KR
Sbjct: 277 INFSVFPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKR 330
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 157 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 330
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 331 FMRFMMMRAE 360
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 157 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 330
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 331 FMRFMMMRAE 360
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 157 KYTKPEVE-VRTSKELLLNPVVISR-NSNEKVLIESSINSIRVSIMIKQADEIEKILCKK 330
K+T + + + K+ L++P V+ + ++K+L+E+ + + V ++ Q + +K
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736
Query: 331 FMRFMMMRAE 360
+ M +A+
Sbjct: 737 YYSAKMSKAQ 746
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 379 RKPVDGYHISFLITNFHTEQMYKHKLVD 462
RK Y ++ + HT++M++HKLV+
Sbjct: 1646 RKEAGSYILNPSLDLKHTQEMFEHKLVE 1673
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,722
Number of Sequences: 5004
Number of extensions: 48222
Number of successful extensions: 153
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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