Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25b07
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-16|AAK93841.1|  169|Caenorhabditis elegans Arp2/3 complex...   263   7e-71
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF038615-7|AAB94147.1|  479|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U21324-16|AAK93841.1|  169|Caenorhabditis elegans Arp2/3 complex
           component protein 6 protein.
          Length = 169

 Score =  263 bits (645), Expect = 7e-71
 Identities = 123/168 (73%), Positives = 148/168 (88%)
 Frame = +1

Query: 64  MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 243
           M+ATL+PYL AVRHTL AA+CLE FSSQVVE++ KPEVEV+TSKELL+ PVV++RN  E+
Sbjct: 1   MSATLQPYLEAVRHTLQAALCLEQFSSQVVERHNKPEVEVQTSKELLMTPVVVARNKQER 60

Query: 244 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITN 423
           VLIE S+NS+R+SI IKQ+DEIEKILC KF RFM  RA+NF VLRRKP+ GY ISFLIT 
Sbjct: 61  VLIEPSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITA 120

Query: 424 FHTEQMYKHKLVDFVIYFMEEIDKEISEMKLAVNARARICSEEFLKRF 567
            HTE M+KHKLVDF+++FM+EIDKEISEMKL++NARAR+ +EEFLKRF
Sbjct: 121 SHTEAMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVSAEEFLKRF 168


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -1

Query: 440 ICSVWKLVIKKLIWYPSTGFLLNTMKFSALIIMNR 336
           ICS++K +++ L +  +TGFL   +K S +++ N+
Sbjct: 421 ICSLFKQLLEGLAYIHNTGFLHRDIKCSNILVNNK 455


>AF038615-7|AAB94147.1|  479|Caenorhabditis elegans Hypothetical
           protein R02D3.7 protein.
          Length = 479

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 60  YNGCNFKTVSNSGASHAHCRYVLRTLFIASCREIHQAGGRS*NKQRTFTQSCCYFKKF 233
           Y GCN K    S  S +   ++L       CR+ H +  +  N +R F QS   FK++
Sbjct: 183 YRGCNLKCPECSSTSESLDEFLLH------CRQEHMSHDQKFNLEREFFQSRDQFKEW 234


>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/61 (24%), Positives = 33/61 (54%)
 Frame = +1

Query: 139 SSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEKVLIESSINSIRVSIMIKQADEIEKI 318
           +S V  +  KP     T +  LL+P+  +  S++K+ I+ ++ SI   + +K+ +E   +
Sbjct: 349 TSNVTSQLNKPSPSPHTQRVPLLSPLASATRSSQKMFID-TLRSI--DVKLKKLEEENSV 405

Query: 319 L 321
           +
Sbjct: 406 I 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,933,528
Number of Sequences: 27780
Number of extensions: 262126
Number of successful extensions: 664
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)