Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25b06
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   177   9e-46
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.5  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   3.3  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   3.3  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   4.4  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   4.4  
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    26   4.4  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   5.8  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   5.8  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   5.8  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   7.6  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   7.6  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   7.6  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  177 bits (432), Expect = 9e-46
 Identities = 91/152 (59%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
 Frame = +2

Query: 134 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGL-TKGKHGFHVHEFGDNTNGCTSAG 304
           +AV VLRGD  VSG V F+Q D+ S V V  ++ G     K GFH+H+FGDNTNGCTSAG
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 305 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVH 484
            HFNPE + HG  ++AVRHVGDLGN+E+ +  G  K +  DS ISL G NSIIGRT+V+H
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFSDSVISLFGANSIIGRTIVIH 121

Query: 485 ADPDDLGLGGHELSKTTGNAGGRIACGVIGLA 580
           A  DDLG G  E S  TGNAG R ACGVIG+A
Sbjct: 122 AGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
 Frame = -2

Query: 670  KQKLVFKNIMKSLNIVVPSPTYEKCMYLNLGQANDSTSNTATGITSGLT*LMA------T 509
            K  L  KN+  SLN+ +            L +  DS    +  + SGL  L A      T
Sbjct: 861  KLSLDLKNLRSSLNVAISDNDQILTQLAELSKNYDSLEQESAQLNSGLKSLEAEKQLLHT 920

Query: 508  ESQVIRVSMDN*SATNDAVRSMKRDLG 428
            E++ + + +D  +       S   DLG
Sbjct: 921  ENEELHIRLDKLTGKLKIEESKSSDLG 947


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = -2

Query: 610 TYEKCMYLNLGQANDSTSNTATGITSGLT*LMATE----SQVIRVSMDN*SATNDAVRSM 443
           T++K    N   + D+ S+  T  + G++ +   +    S  + ++ ++ S+TND +R +
Sbjct: 492 TFDKAQLSNTEDSYDNISH-GTSYSEGVSSIHMVKGERGSNNLELTSESLSSTNDTIRRL 550

Query: 442 KRDL 431
           +RDL
Sbjct: 551 QRDL 554


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 559 LWSHWLGQDLNTYIFHMLGLVLQ 627
           +WS W+  +L T  FHM  + LQ
Sbjct: 424 MWSPWIIDNLGTVSFHMYVIYLQ 446


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
 Frame = +3

Query: 174 FSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELISTLKNKIMVVPVLL 353
           FSS+S  +     F   S +    N  S  +   TT   ++    + T  + I+  P++ 
Sbjct: 508 FSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTSSSLIISSPIIS 567

Query: 354 YAMSATSVTLRQLK---TLESLKYQSKIPRSLFMDLTASLVAL 473
            +++ATS +   L    T  +  Y S +  S   D ++SL+ +
Sbjct: 568 SSLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSSSLITV 610


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +2

Query: 368 DLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAG 547
           D+ NI+  ++  + ++++   Q++    N  + R +    +   L L  H L+   G AG
Sbjct: 431 DIINIDIEKEKTIEEIAMGFIQVA----NETMCRPIRKLTESRGLDLSAHHLA-VFGGAG 485

Query: 548 GRIACGV---IGLAKI*IHTF 601
           G+ AC +   + + KI IH +
Sbjct: 486 GQHACAIASLLNIEKIIIHKY 506


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 292 ATVCVVTKFVHMETVFTLSQ-ALDLSRNNNR*LFILLIEENSSANIT 155
           A +C+  + VH++ V +LS+    +S N N+ L +LLI   S+   T
Sbjct: 144 AGLCIGDELVHVQNVTSLSELPTFISNNVNKTLDVLLIRGYSADGST 190


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 591 YIHFSYVGLGTTIFSDFM-IFLNTNFCLNF 677
           Y HF+++GL   I  D   I+L  + CLN+
Sbjct: 241 YFHFTWIGLAVFITMDTSDIWLALSKCLNY 270


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 350 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 433
           A R   DL NI  +ED  V+  S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 312 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 413
           STLK + +  PV L A+    ++LR L   ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 291  QPFVLSPNSCTWKPCLPLVKPWTSPETT 208
            +PF L+P + +     P +KPW  P  T
Sbjct: 1190 RPFNLTPFAISLNALTPQLKPWLPPTDT 1217


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 480 TTKVRPMMLLGP*REIWESWIDTLVTP 400
           +T + P  LL    E+WE   DT +TP
Sbjct: 78  STLIEPNYLLTAWHELWEELQDTYMTP 104


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 306  LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKIPRSLFM 446
            L++T  +  + +PVLLY +   ++ +  L++ ES  + + KI  +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,689
Number of Sequences: 5004
Number of extensions: 58758
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)