Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25b01
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1111 + 10279778-10280065,10280265-10280340,10280734-102819... 32 0.33
08_02_0707 - 20212190-20214592 30 1.3
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 29 1.8
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 29 2.4
12_02_0389 - 18499372-18499606,18499713-18499882 29 3.1
05_06_0003 + 24797098-24797223,24797981-24798193,24798289-247984... 28 4.1
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 28 4.1
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 28 4.1
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 28 5.4
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 27 7.2
05_05_0009 + 21485254-21485426,21485512-21485734 27 7.2
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626... 27 7.2
08_01_0749 + 7063297-7064370 27 9.5
05_01_0008 + 60498-60552,60644-60864,60956-61013,61271-61443,615... 27 9.5
>07_01_1111 +
10279778-10280065,10280265-10280340,10280734-10281944,
10283779-10284138
Length = 644
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -3
Query: 283 EHWHIGDLSCLLQQFNVFVHLRQEMHERCSEKYSATKRQQSHHQLIRRPQVW 128
EHW+ S L +F E+++ C KY K ++ H+L ++ VW
Sbjct: 564 EHWNQAVKSLSLNVQKLFSDRDPELYKECLRKYEENKAKEKDHKL-KQESVW 614
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 322 HHEESSAHYQTGKEHWHIGDLSCLLQQFNVFVHLRQEMHERCSEKYSATKRQQS 161
HH + S H+Q +H H D+S + + +H CSE +S QS
Sbjct: 589 HHHDHSEHHQQSGDHAH-QDISNISSDPAILEIPLNSIHTHCSEAHSCNGGLQS 641
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 64 VRGMFAVVDIEEVQLVHEIPRSKPAVFESAGDGTVGVWWRSTFRYNVHAS 213
V G V D+++ RS E A GTVG +W ST + N H S
Sbjct: 384 VLGALTVDDLKQSSATSSPRRSPSHNREEAILGTVGSYWSSTKQDNAHCS 433
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 521 IXLGMNRELNDYDRYWFHS--QFVWSLG 444
+ LG N L+D D YWFH+ F+ SLG
Sbjct: 566 LRLGYNVLLSDVDVYWFHNPVSFLHSLG 593
>12_02_0389 - 18499372-18499606,18499713-18499882
Length = 134
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 416 SISGNDPEINQETKQIENETNSGHSHLVL 502
+I+ DP I ++T+ ++NE +S HL+L
Sbjct: 8 NITAMDPPIAEQTRSLDNEPSSDPHHLLL 36
>05_06_0003 +
24797098-24797223,24797981-24798193,24798289-24798444,
24798555-24798959
Length = 299
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 271 CASVPCRFDNVRRILHDVLSRRIS 342
C R D R++LHDV+ RRIS
Sbjct: 204 CLIKQSRHDEARQVLHDVVLRRIS 227
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 28.3 bits (60), Expect = 4.1
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = -1
Query: 327 KYIMKNPPHIIKPARNTGTSGIS----PVSCNNSMFSSTSGRRC---MNVVAKSTPPPNA 169
K + KNP H R+ GT+GI+ + + +S +N+ AKS P
Sbjct: 210 KTVQKNPEH--GDLRSNGTNGINCGQRRKAFKEKLQDKSSAETLTFRLNIPAKSAPSSGF 267
Query: 168 NSPITS*FEDRRFGSRDFVN 109
+SP+ S RR S DF++
Sbjct: 268 SSPVQS---PRRLSSVDFLS 284
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 294 KPARNTGTSGISPV--SCNNSMFSSTSGRRCMNVVAKSTPPPNANSP 160
K TG P+ CN + S+TSG ++ ++ S+PPP+++ P
Sbjct: 681 KQTDRTGHPSSDPLIADCNICLKSATSGT--LDTISPSSPPPSSSPP 725
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 165 CWRLVAEYFSLQRSCISC-LRWTKTL 239
CWRLV + L R SC LRWT L
Sbjct: 1723 CWRLVPKLAGLLRCGKSCRLRWTNYL 1748
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 361 QGAQTIREERRQTVQPKEEHLGERSRNKPRDQT 459
Q +Q+ +E QTV P+ HLG + +P Q+
Sbjct: 89 QVSQSQQERPGQTVYPQASHLGHQQLQQPTQQS 121
>05_05_0009 + 21485254-21485426,21485512-21485734
Length = 131
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 168 WRLVAEYFSLQRSCISCLRWTK 233
WR VAE F +R C LRW K
Sbjct: 57 WRAVAEVFWSRRRCPFGLRWPK 78
>03_05_0105 -
20861130-20861384,20861472-20862262,20862364-20862618,
20862713-20862827,20862959-20863011,20863113-20863373,
20863699-20863749,20863863-20864114,20864504-20864726,
20865317-20865460
Length = 799
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +2
Query: 266 PDVPVFLAGLIMCGGFFMMYLVEELVHLYIHAREHKPSEKNDAKPFSLRKSISGNDPEIN 445
PD V + LI+ FM++ V ++V + +HA +H D F+L IS +
Sbjct: 88 PDDVVGVLSLIVYS--FMLFTVIKIVFVALHANDH-----GDGGTFALYSLISRHAKVSL 140
Query: 446 QETKQIENETNSGHS 490
Q E+E SG+S
Sbjct: 141 IPNHQAEDELISGYS 155
>08_01_0749 + 7063297-7064370
Length = 357
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 326 LVEELVHLYIHAREHKPSEKNDAKPFSLRKSISGNDPEINQETKQIENETNSGHSHLVLD 505
L E+L + R K SE+N + + ++ + T + E+E S H HL +
Sbjct: 288 LQEDLTYAEKPVRILKVSERNTRNRVTRFCKVQWSNHSEEEATWEREDELKSAHPHLFVS 347
Query: 506 SSQ 514
SS+
Sbjct: 348 SSE 350
>05_01_0008 +
60498-60552,60644-60864,60956-61013,61271-61443,
61528-61711,61823-61993,62483-62514,62596-62638,
62768-62835,63561-63605,63695-64162
Length = 505
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 343 SLVHTRQGAQTIREERRQTVQPKEEHLGERSRNKP 447
SL H+R RE+R + EEH +RN P
Sbjct: 255 SLNHSRDSINITREDRFSQYRALEEHAPSAARNGP 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,640
Number of Sequences: 37544
Number of extensions: 349951
Number of successful extensions: 1211
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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