Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25b01
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   4.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 108 QLNFFDINNGKHPTNMDIPNKDTIVTI 28
           Q+N  ++   K   + D+P K TI T+
Sbjct: 111 QINATELQKIKLEIHRDLPGKSTITTV 137


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 428 NDPEINQETKQIENE 472
           ND  IN+E + IENE
Sbjct: 434 NDLSINEEKRTIENE 448


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 186  YFSLQRSCISCLRWTKTLNCCKRQER 263
            YF++Q   I+   WT   N  K Q R
Sbjct: 1531 YFTIQYRPINEFHWTLVSNSVKMQRR 1556


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 186  YFSLQRSCISCLRWTKTLNCCKRQER 263
            YF++Q   I+   WT   N  K Q R
Sbjct: 1527 YFTIQYRPINEFHWTLVSNSVKMQRR 1552


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 289 RFDNVRRILHDVLSRRISSLVHTRQGAQTIREERRQTVQPKEEHLGERSRNKPRDQTN*E 468
           R++ +      +L  R S   ++R      RE++    + K     ERS+ + RD+T  E
Sbjct: 18  RYEKLHNEKEKLLEERTSRKRYSRSRE---REQKSYKNERKYRKYRERSKERSRDRTERE 74


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease
          precursor protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 45 PYSGYPCSWDV 77
          PYSG  C+W +
Sbjct: 64 PYSGSKCTWTI 74


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 106 VELLRYQQRQTSHEHGYPE*GYH 38
           VE   + Q  T H H  P+ G H
Sbjct: 164 VESQMHHQMHTQHPHMQPQQGQH 186


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 379 REERRQTVQPKEEHLGERSRNKPRDQTN*E 468
           RE++    + K     ERS+ + RD+T  E
Sbjct: 45  REQKSYKNERKYRKYRERSKERSRDRTERE 74


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 364 GAQTIREERRQTVQPKEEHLGERSRNKPRDQ 456
           G Q  R +RR+      E   E    KP++Q
Sbjct: 122 GNQDNRNDRRKKTFAAREDNDEEEAQKPKEQ 152


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 96  RSSTGSRNPAIQ 131
           RS +GSRNP +Q
Sbjct: 502 RSFSGSRNPLLQ 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,098
Number of Sequences: 438
Number of extensions: 3660
Number of successful extensions: 40
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)