Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25a20
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 161 7e-41
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 73 3e-14
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 31 0.21
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 30 0.28
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.28
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 29 0.85
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 27 2.6
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 26 4.5
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 26 6.0
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 6.0
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 6.0
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 7.9
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 7.9
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa... 25 7.9
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 161 bits (392), Expect = 7e-41
Identities = 72/195 (36%), Positives = 114/195 (58%)
Frame = +2
Query: 77 EWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPAN 256
E+ +TP+P+DDG NP+ I ++ +E YFRA++ E S R L+LT + NPA+
Sbjct: 16 EYGPLTPIPQDDGENPLAKICYTTGYEQGMAYFRAIMAKKEYSLRALNLTGFLIMNNPAH 75
Query: 257 YTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDPTMELELTG 436
YTVW YR +L H + + EL++++ + ++ KNYQVWHHR+ ++ ++ ELE T
Sbjct: 76 YTVWAYRFQILNHTPSYIDNELEWLDEIAEDFQKNYQVWHHRQKILSLTKNYERELEFTK 135
Query: 437 DALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNNLGW 616
D KNYH W +R W ++ F Y +EL + L+ D+ NNSAWN R++V+
Sbjct: 136 KMFEIDSKNYHVWSYRVWILQNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVLFETSKV 195
Query: 617 SDLICQQEVCYTLEK 661
++E+ Y +K
Sbjct: 196 VSWSLEEELNYLKDK 210
Score = 34.7 bits (76), Expect = 0.013
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 161 VYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLL----KHLNTDLRTELDY 328
V+ Y +LQ+ + L LT + LE + N + W +R +L K ++ L EL+Y
Sbjct: 147 VWSYRVWILQNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELNY 206
Query: 329 VEAVIKNSPKNYQVWHH 379
++ I +P N W++
Sbjct: 207 LKDKILFAPDNQSAWNY 223
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 73.3 bits (172), Expect = 3e-14
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 18/168 (10%)
Frame = +2
Query: 137 AHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKH------- 295
A E++ + F+ + + SE L LT + L+ NP Y+VW YRR++L +
Sbjct: 23 AKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNPETYSVWNYRREILLNDVFPKIS 82
Query: 296 LNTD---LRTELDYVEAVIKNSPKNYQVWHHRRVLVEWLQDP--TMELELTGDALLQDPK 460
LN L EL YV + +K PK Y +++HRR +E P E+ +T L D +
Sbjct: 83 LNEKQDLLDNELKYVLSKMKVFPKVYWIFNHRRWCLENAPYPNWNYEMMITEKLLSADAR 142
Query: 461 NYHAWQHRQWAIKTF------GLYEKELDFVDNLITDDVRNNSAWNQR 586
N+H W +R++ + L +KE+++ + I + N SA + R
Sbjct: 143 NFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSNFSALHNR 190
Score = 35.9 bits (79), Expect = 0.006
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 20/110 (18%)
Frame = +2
Query: 221 LTKDALELNPANYTVWQYRRDLLKHL----NTDL-RTELDYVEAVIKNSPKNYQVWHHRR 385
+T+ L + N+ W YRR ++ + N L + E++Y + I + N+ H+R
Sbjct: 132 ITEKLLSADARNFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSNFSALHNRT 191
Query: 386 VLVEWL----QDPT-----------MELELTGDALLQDPKNYHAWQHRQW 490
L+E + DP EL++ A+ DP + W + +W
Sbjct: 192 KLIETILNLEADPNSQKALAKQILEQELDMIHQAVFTDPDDSSVWIYHRW 241
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 206 ERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTEL 322
E+ L + A+ +P + +VW Y R L+ H N + T L
Sbjct: 216 EQELDMIHQAVFTDPDDSSVWIYHRWLMGHCNPNSMTPL 254
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +2
Query: 353 PKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDF 532
PK+ WH ++ +D L+ +AL P N W + GLY+ D
Sbjct: 73 PKSQFCWHALAIVYRETKDYNNSLKCYQNALAISPNNESLWYDAAYLQAQLGLYQPLFDN 132
Query: 533 VDNLITDDVRN 565
+ L+ D N
Sbjct: 133 WNRLLQLDSSN 143
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 191 SNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHL---NTDLRTELDYVEAVIKNSPKN 361
S + S+ ++ D L L+P Y DLL L + + E+ +E +I PKN
Sbjct: 676 SAQMSDSIISSLSDVLVLSPLEVLASWYAADLLDALLMESLSRKVEISEIEEIISLCPKN 735
Query: 362 YQVWHH 379
+ H
Sbjct: 736 SSIIRH 741
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = +2
Query: 167 DYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIK 346
D+FR+++Q NEK + T ++ +LN Y+R L++ L EL+ ++++ +
Sbjct: 631 DFFRSLVQENEKLLDMAPATPNS-KLNTNLIEQTSYQRSLIR--LEQLTNELESLKSISR 687
Query: 347 NSPKNYQ 367
N K ++
Sbjct: 688 NKEKKFE 694
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 28.7 bits (61), Expect = 0.85
Identities = 21/124 (16%), Positives = 44/124 (35%)
Frame = +2
Query: 164 YDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVI 343
Y ++ + + ++ K A++L NY W L + Y+++++
Sbjct: 899 YRFYECDTTKDATLQVAINCIKQAIKLEAKNYVFWNMLGVLFSQTKAVRSAQHCYIQSLL 958
Query: 344 KNSPKNYQVWHHRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKE 523
N ++ VW + L D ++ DP N AW + + G K
Sbjct: 959 LNE-RSSGVWANYGALCIQNHDVECANAAFTRSISIDPDNSQAWLGKAYCSIAVGSIRKA 1017
Query: 524 LDFV 535
+ +
Sbjct: 1018 VQII 1021
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 110 DGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTK 229
+G +P +IAH E+ E++ YF ++ EK R+L L K
Sbjct: 205 EGLSPAELIAHKEESEEMGGYF--IVNGIEKLIRMLILPK 242
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 443 LLQDPKNYHAWQHRQWAI-KTFGLYEKELD 529
LLQ+ K Y W+ R A+ K FG E +LD
Sbjct: 119 LLQEAKTYEEWKERARALDKYFGNDEWKLD 148
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 647 NTLLADKSNPTSLNYCSLQSIADSTLNYYERR 552
N+ + NPT +N CS D+T N +++
Sbjct: 222 NSSTNESPNPTDINVCSNDDATDNTENNLKKK 253
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 42 VMFYGYHTKKGRSGVMLRLFQRMTVPTQW 128
++++G T GRS ++L + + V T+W
Sbjct: 639 ILYFGVQTHVGRSELLLDVVRTSKVATRW 667
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 650 CNTLLADKSNPTSLNYCSLQSIADSTLNYY 561
CN +L+ NP +L + SI D LN +
Sbjct: 611 CNYVLSSSKNPMNLLFTLHNSITDGKLNVH 640
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 65 KERPEWSDVTPVPEDDGPNPVVVIAHSEKF 154
+ R EW + PV D V+I+H+ KF
Sbjct: 200 RSRTEWPEGIPVKGHDTYEDKVIISHNWKF 229
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 316 CPQVSVQMFQQISPVLPNSVVSWI 245
CP+ +++P PN+ +SWI
Sbjct: 347 CPRAGHSHTYELAPASPNTSISWI 370
>SPBC337.15c |coq7||ubiquinone biosynthesis protein
Coq7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 194 NEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNT 304
N++ HL A E + ++R D L+HLNT
Sbjct: 146 NDQLRETAHLENKAPEFKEIRSHLAEFRDDELEHLNT 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,094,870
Number of Sequences: 5004
Number of extensions: 69259
Number of successful extensions: 242
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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